View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16976_low_32 (Length: 269)

Name: NF16976_low_32
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16976_low_32
NF16976_low_32
[»] chr3 (2 HSPs)
chr3 (1-269)||(33153349-33153613)
chr3 (220-258)||(31264764-31264802)
[»] chr4 (7 HSPs)
chr4 (173-263)||(37660914-37661004)
chr4 (213-267)||(7147742-7147796)
chr4 (220-266)||(29802549-29802595)
chr4 (213-269)||(41603290-41603346)
chr4 (216-258)||(21543357-21543399)
chr4 (187-269)||(21502814-21502898)
chr4 (213-265)||(5846553-5846605)
[»] chr2 (7 HSPs)
chr2 (193-269)||(13154482-13154560)
chr2 (217-269)||(2336629-2336681)
chr2 (207-260)||(13766779-13766832)
chr2 (187-240)||(45635967-45636022)
chr2 (206-269)||(33810766-33810828)
chr2 (199-266)||(25389999-25390068)
chr2 (213-269)||(39710188-39710244)
[»] chr8 (5 HSPs)
chr8 (215-266)||(40991756-40991807)
chr8 (214-269)||(4715278-4715333)
chr8 (213-266)||(5172879-5172932)
chr8 (213-269)||(7480299-7480355)
chr8 (213-269)||(20995502-20995558)
[»] chr6 (4 HSPs)
chr6 (213-269)||(34661710-34661766)
chr6 (187-269)||(5034922-5035009)
chr6 (187-269)||(6071106-6071189)
chr6 (219-269)||(30618716-30618766)
[»] chr5 (2 HSPs)
chr5 (209-269)||(10351274-10351334)
chr5 (136-269)||(31509550-31509680)
[»] chr7 (3 HSPs)
chr7 (214-261)||(28550424-28550471)
chr7 (220-263)||(46411917-46411960)
chr7 (219-269)||(28855834-28855884)
[»] chr1 (2 HSPs)
chr1 (220-269)||(50081158-50081207)
chr1 (219-269)||(17996068-17996118)
[»] scaffold0045 (1 HSPs)
scaffold0045 (224-263)||(41581-41621)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 33153349 - 33153613
Alignment:
Q  1 attgtatcaaagttgatagtttgaataagggtttcaccgactcattgtgtcaaaagtcttcctgacaacagtggtcaaacaacatgtctcgtagtgccgc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  33153349 attgtatcaaagttgatagttcgaataagggtttcaccgactcattgtgtcaaaagtcttcctgacaatagtggtcaaaca---tgtctcgtagtgccgc 33153445  T
Q  101 tctgacaacggcgatgcaaatgcaagtgtaagtgggatgaaaaagcttccgcttgagggggagcatgctcacatgaatggatataatcacacttgagagg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33153446 tttgacaacggcgatgcaaatgcaagtgtaagtgggatgaaaaagcttccgcttgagggggagcatgctcacatgaatggatataatcacacttgagagg 33153545  T
Q  201 gagactgttgtggcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  33153546 gagactgttgtggcaaatgtgagttagaagtctcatattgcttg-aaaagtggaggttgaacactttat 33153613  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 31264764 - 31264802
Alignment:
Q  220 tgagttagaagtctcacattgcttgaaaaagtggaggtt 258  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  31264764 tgagttagaagtctcacattacttgaaaaaatggaggtt 31264802  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 37661004 - 37660914
Alignment:
Q  173 atgaatggatataatcacacttgagagggagactgttgtggcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaaca 263  Q
    ||||||||||  | ||| |||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  37661004 atgaatggatggactcatacttgagagggagattgttgtggcaagtgtgagttagaagtcccaaattgcttgaaaaagtgaaggttgaaca 37660914  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 7147796 - 7147742
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacacttt 267  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7147796 gcaagtgtgagttagaagtctcacattgcttagaaaagtggaggttgaacacttt 7147742  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 29802549 - 29802595
Alignment:
Q  220 tgagttagaagtctcacattgcttgaaaaagtggaggttgaacactt 266  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||    
T  29802549 tgagttagaagtctcacattgcttgataaagtggaggttgagcactt 29802595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 41603346 - 41603290
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||| ||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  41603346 gcaaatgtgagttagaagtcccacgttgcttggaaaagtggaggttgagcactttat 41603290  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 21543399 - 21543357
Alignment:
Q  216 agtgtgagttagaagtctcacattgcttgaaaaagtggaggtt 258  Q
    |||||||||| |||||||||||||  |||||||||||||||||    
T  21543399 agtgtgagttggaagtctcacattatttgaaaaagtggaggtt 21543357  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 21502898 - 21502814
Alignment:
Q  187 tcacacttgagagggagactgttgtg--gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||||||| |  || |||||||  |||||||||||  |||||||||||||| |||||||||||   ||||||||| |||||    
T  21502898 tcacacttgagatgaggattgttgtgtagcaagtgtgagagagaagtctcacattacttgaaaaagtaagggttgaacagtttat 21502814  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 5846605 - 5846553
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacact 265  Q
    |||||| |||||||||||||||| |||| ||  ||||||||| ||||||||||    
T  5846605 gcaagtttgagttagaagtctcatattgtttataaaagtggatgttgaacact 5846553  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 13154560 - 13154482
Alignment:
Q  193 ttgagagggagactgttgtg--gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||| ||| |||||||  |||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13154560 ttgagaggaagattgttgtgtagcaagtatgagttagaagtctcacattgcttagaaaagtggaggttgaacactttat 13154482  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 2336629 - 2336681
Alignment:
Q  217 gtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  2336629 gtgtgagttagaagtttcaaattgcttagaaaagtggaggttgaacactttat 2336681  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 13766779 - 13766832
Alignment:
Q  207 gttgtggcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttga 260  Q
    ||||||| ||||||||||||||||||| |||||| ||  |||||||||||||||    
T  13766779 gttgtggtaagtgtgagttagaagtctaacattgtttagaaaagtggaggttga 13766832  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 45636022 - 45635967
Alignment:
Q  187 tcacacttgagagggagactgttgtgg--caagtgtgagttagaagtctcacattg 240  Q
    |||||||||||||||||| |||||||   |||||||||| ||||||||||||||||    
T  45636022 tcacacttgagagggagattgttgtgtaccaagtgtgagatagaagtctcacattg 45635967  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 33810766 - 33810828
Alignment:
Q  206 tgttgtggcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||| ||||| || |||||||||||||| ||| |||||| ||||||||||| |||||    
T  33810766 tgttgtggcaattgtga-ttggaagtctcacattgtttggaaaagtagaggttgaacattttat 33810828  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 25390068 - 25389999
Alignment:
Q  199 gggagactgttgtg--gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactt 266  Q
    |||||| |||||||  |||||| |||||||||| |||||||||||||  |||| |||||||| |||||||    
T  25390068 gggagattgttgtgtagcaagtttgagttagaaatctcacattgcttagaaaaatggaggtttaacactt 25389999  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 39710188 - 39710244
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||||||| ||||||| ||||||||| | |||| | |||||||||||| ||||    
T  39710188 gcaagtgtgagtcagaagtcccacattgctaggaaaattagaggttgaacacgttat 39710244  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 40991756 - 40991807
Alignment:
Q  215 aagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactt 266  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  40991756 aagtgtgagttagaagtcccacattgcttagaaaagtggaggttgaacactt 40991807  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 4715278 - 4715333
Alignment:
Q  214 caagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||||||||||  ||||| |   ||||||||||||||||||||||||    
T  4715278 caagtgtgagttagaagtcttgcattgttaagaaaagtggaggttgaacactttat 4715333  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 5172879 - 5172932
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactt 266  Q
    ||||||||||||||||||||  | |||||||  ||||||| |||||||||||||    
T  5172879 gcaagtgtgagttagaagtcatatattgcttagaaaagtgaaggttgaacactt 5172932  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 7480355 - 7480299
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||| ||||  |||||  ||| |||||||||||||||||||| ||||||||||    
T  7480355 gcaagtgtaagttgaaagtccaacaatgcttgaaaaagtggaggtttaacactttat 7480299  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 20995558 - 20995502
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||||||||| | |||||||||    | |||||||||||||||||||||||||    
T  20995558 gcaagtgtgagttatatgtctcacatcagataaaaaagtggaggttgaacactttat 20995502  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 34661766 - 34661710
Alignment:
Q  213 gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||||||| ||||||||| |||  ||||||||||||||| ||||||||    
T  34661766 gcaagtgtgagttagaaatctcacattacttagaaaagtggaggttgatcactttat 34661710  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 5035009 - 5034922
Alignment:
Q  187 tcacacttgagagggagactgttgtggcaagtgtgag-----ttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||| ||||| || ||| ||||||||||||||||||     |||  |||| ||||||||||| ||||||||||||||| ||||||||    
T  5035009 tcacaattgaggggcagattgttgtggcaagtgtgaggtgacttaatagtcccacattgcttggaaaagtggaggttgaccactttat 5034922  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 6071106 - 6071189
Alignment:
Q  187 tcacacttgagagggagactgttgtg-gcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||| ||||| || ||| ||||||| |||||||||||||| | ||| |||||||  |  ||||||||||||||||||||||||    
T  6071106 tcacatttgaggggaagattgttgtgtgcaagtgtgagttatatgtcccacattgaatagaaaagtggaggttgaacactttat 6071189  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 30618766 - 30618716
Alignment:
Q  219 gtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||||  |||| | ||||||||||||||| ||||||||||||    
T  30618766 gtgagttagaagtcctacatcggttgaaaaagtggaggatgaacactttat 30618716  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 10351334 - 10351274
Alignment:
Q  209 tgtggcaagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    |||||||||||| |||||||||||||||||||  | |||||| |||||||||||| |||||    
T  10351334 tgtggcaagtgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttat 10351274  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 31509550 - 31509680
Alignment:
Q  136 gatgaaaaagcttccgcttgagggg-gagcatgctcacatgaatggatataatcacacttgagagggagactgttgtg-gcaagtgtgagttagaagtct 233  Q
    ||||||| ||||||||||||||||| |||||||     |||||| |||  | ||||||||||| | |||| ||||||| |||||||||||||| | ||||    
T  31509550 gatgaaagagcttccgcttgaggggtgagcatg-----atgaattgatggactcacacttgagggagagattgttgtgtgcaagtgtgagttatatgtct 31509644  T
Q  234 cacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||| |  |  ||||||||||||||| ||||||||    
T  31509645 cacatcggatagaaaagtggaggttgagcactttat 31509680  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 28550471 - 28550424
Alignment:
Q  214 caagtgtgagttagaagtctcacattgcttgaaaaagtggaggttgaa 261  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  28550471 caagtgtaagttggaagtcttacattgcttgaaaaagtggaggttgaa 28550424  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 46411960 - 46411917
Alignment:
Q  220 tgagttagaagtctcacattgcttgaaaaagtggaggttgaaca 263  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  46411960 tgagttagaagtctcacattgtttgaaaaagtggagattgaaca 46411917  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 28855884 - 28855834
Alignment:
Q  219 gtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||||| |||||||||| ||||||| |||||||  |||||||    
T  28855884 gtgagttagaagtctgacattgcttggaaaagtgaaggttgagtactttat 28855834  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 50081207 - 50081158
Alignment:
Q  220 tgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||  ||||||||||||||||||||||| |||||| |||||    
T  50081207 tgagttagaagttccacattgcttgaaaaagtggaggctgaacattttat 50081158  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 17996118 - 17996068
Alignment:
Q  219 gtgagttagaagtctcacattgcttgaaaaagtggaggttgaacactttat 269  Q
    ||||||||||||||| |||||||||| ||||||| |||||||  |||||||    
T  17996118 gtgagttagaagtctgacattgcttggaaaagtgaaggttgagtactttat 17996068  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 41621 - 41581
Alignment:
Q  224 ttagaagtctcacattgcttga-aaaagtggaggttgaaca 263  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  41621 ttagaagtctcacattgcttgaaaaaaatggaggttgaaca 41581  T

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