View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_34 (Length: 254)
Name: NF16976_low_34
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 37805782 - 37805529
Alignment:
| Q |
1 |
tttagttatggacaacattagtaaattaaattaaataatttgatccacttcctttttgtcctataagaaaaaatgtcacaaaatataagcccgat-tttg |
99 |
Q |
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| T |
37805782 |
tttagttatgaacaacattagtaaatttaattaaataatttgacccacttcctttttgtcctaaaagaaaaa-tgtcacaaaatataagcccgatctttg |
37805684 |
T |
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| Q |
100 |
tttaattaaaataaaaaagttagagctattaccatatggactcaagtctccttccacaccggtcatctgaattttttaaagagnnnnnnncatattaagt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
37805683 |
tttaattaaaataaaaaagttagagctattaccatatggactcaagtctccttccacaccggccatctgaattttttaaagagaaaaaaacatattaagt |
37805584 |
T |
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| Q |
200 |
tgtggaaaataaaaacaatagcatgactaaaaagaatgtaaagaatatgtgtgtg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37805583 |
tgtggaaaataaaaacaatagcatgactaaaaagaatgtaaagaatatgtgtgtg |
37805529 |
T |
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