View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16976_low_41 (Length: 239)

Name: NF16976_low_41
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16976_low_41
NF16976_low_41
[»] chr4 (21 HSPs)
chr4 (162-239)||(27586393-27586470)
chr4 (31-94)||(27586259-27586322)
chr4 (169-206)||(3387017-3387054)
chr4 (169-206)||(21076094-21076131)
chr4 (169-206)||(21246107-21246144)
chr4 (169-206)||(23147673-23147710)
chr4 (169-206)||(25938633-25938670)
chr4 (169-206)||(29148821-29148858)
chr4 (169-206)||(42053072-42053109)
chr4 (169-206)||(46030472-46030509)
chr4 (169-206)||(52595813-52595850)
chr4 (169-206)||(54978951-54978988)
chr4 (169-204)||(8614810-8614845)
chr4 (169-211)||(2073431-2073473)
chr4 (178-216)||(14595587-14595625)
chr4 (169-211)||(34459436-34459478)
chr4 (169-206)||(2224762-2224799)
chr4 (168-229)||(7117760-7117820)
chr4 (169-206)||(8066226-8066263)
chr4 (179-211)||(7250409-7250441)
chr4 (169-205)||(42755610-42755646)
[»] chr1 (16 HSPs)
chr1 (169-229)||(2465392-2465452)
chr1 (175-232)||(236743-236800)
chr1 (169-206)||(9222501-9222538)
chr1 (169-206)||(44327744-44327781)
chr1 (169-205)||(12560428-12560464)
chr1 (169-211)||(945733-945775)
chr1 (169-211)||(2975059-2975101)
chr1 (169-211)||(25059354-25059396)
chr1 (169-211)||(32835323-32835365)
chr1 (169-206)||(610968-611005)
chr1 (169-206)||(13796884-13796921)
chr1 (169-206)||(25815137-25815174)
chr1 (169-206)||(29054417-29054454)
chr1 (169-205)||(2433471-2433507)
chr1 (168-204)||(2501826-2501862)
chr1 (179-211)||(19506637-19506669)
[»] chr7 (14 HSPs)
chr7 (175-230)||(24430141-24430196)
chr7 (169-206)||(16567832-16567869)
chr7 (169-206)||(16597793-16597830)
chr7 (169-206)||(27398854-27398891)
chr7 (169-206)||(31455165-31455202)
chr7 (169-206)||(39414830-39414867)
chr7 (169-206)||(46181478-46181515)
chr7 (169-206)||(46783333-46783370)
chr7 (169-205)||(3551345-3551381)
chr7 (193-231)||(3551381-3551419)
chr7 (168-206)||(35092548-35092586)
chr7 (169-206)||(10066069-10066106)
chr7 (169-205)||(12920810-12920846)
chr7 (175-223)||(43394127-43394175)
[»] chr6 (8 HSPs)
chr6 (181-231)||(28770057-28770107)
chr6 (175-206)||(13534000-13534031)
chr6 (169-207)||(29641271-29641309)
chr6 (169-206)||(1329367-1329404)
chr6 (169-206)||(6337452-6337489)
chr6 (169-206)||(33328854-33328891)
chr6 (169-206)||(33331866-33331903)
chr6 (179-211)||(6938302-6938334)
[»] chr5 (11 HSPs)
chr5 (169-206)||(24488904-24488941)
chr5 (169-205)||(36323270-36323306)
chr5 (169-231)||(41983470-41983530)
chr5 (169-211)||(6224657-6224699)
chr5 (169-203)||(14088530-14088564)
chr5 (169-211)||(18595615-18595657)
chr5 (169-211)||(22632058-22632100)
chr5 (169-206)||(15719003-15719040)
chr5 (169-206)||(36470312-36470349)
chr5 (169-205)||(4572528-4572564)
chr5 (179-211)||(29456045-29456077)
[»] chr3 (17 HSPs)
chr3 (169-206)||(6408829-6408866)
chr3 (169-206)||(24987223-24987260)
chr3 (169-206)||(41924224-41924261)
chr3 (183-230)||(2150523-2150570)
chr3 (169-204)||(14418470-14418505)
chr3 (169-211)||(11671979-11672021)
chr3 (169-211)||(12905864-12905906)
chr3 (169-211)||(23298144-23298186)
chr3 (169-211)||(39952761-39952803)
chr3 (169-211)||(48080303-48080345)
chr3 (169-211)||(50508688-50508730)
chr3 (169-206)||(39352714-39352751)
chr3 (169-206)||(44792454-44792491)
chr3 (169-206)||(46584820-46584857)
chr3 (169-206)||(49360209-49360246)
chr3 (179-211)||(5040880-5040912)
chr3 (169-205)||(19618940-19618976)
[»] chr2 (10 HSPs)
chr2 (169-206)||(3329419-3329456)
chr2 (169-206)||(4481313-4481350)
chr2 (169-206)||(17961266-17961303)
chr2 (169-206)||(23231991-23232028)
chr2 (169-206)||(30241684-30241721)
chr2 (169-206)||(33867357-33867394)
chr2 (169-211)||(667783-667825)
chr2 (169-206)||(4592005-4592042)
chr2 (169-206)||(12758014-12758051)
chr2 (169-206)||(29155576-29155613)
[»] chr8 (9 HSPs)
chr8 (169-230)||(25178777-25178844)
chr8 (169-211)||(1667420-1667462)
chr8 (169-211)||(6109876-6109918)
chr8 (193-231)||(30801469-30801507)
chr8 (169-206)||(3616682-3616719)
chr8 (169-206)||(7057867-7057904)
chr8 (169-206)||(24789772-24789809)
chr8 (169-202)||(30801510-30801543)
chr8 (179-211)||(2620783-2620815)
[»] scaffold0005 (1 HSPs)
scaffold0005 (178-216)||(221753-221791)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 27586393 - 27586470
Alignment:
Q  162 aagacaatataactaattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataacagtctcatc 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27586393 aagaaaatataactaattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataacagtttcatc 27586470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 27586259 - 27586322
Alignment:
Q  31 gttcggataatacccagtatgagcatgggtaagggtattatactgctcaacctcgcaactccac 94  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||    
T  27586259 gttcgggtaatacccagtatgagcatgggtaagggtattctactgctcaacctctcaaccccac 27586322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 3387017 - 3387054
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3387017 tataattaattaatttatttagctatttaagcctaaac 3387054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 21076131 - 21076094
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21076131 tataattaattaatttatttagctatttaagcctaaac 21076094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 21246144 - 21246107
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21246144 tataattaattaatttatttagctatttaagcctaaac 21246107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 23147710 - 23147673
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  23147710 tataattaattaatttatttagctatttaagcctaaac 23147673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 25938670 - 25938633
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25938670 tataattaattaatttatttagctatttaagcctaaac 25938633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 29148821 - 29148858
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29148821 tataattaattaatttatttagctatttaagcctaaac 29148858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 42053072 - 42053109
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  42053072 tataattaattaatttatttagctatttaagcctaaac 42053109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 46030509 - 46030472
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46030509 tataattaattaatttatttagctatttaagcctaaac 46030472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 52595850 - 52595813
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  52595850 tataattaattaatttatttagctatttaagcctaaac 52595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 54978951 - 54978988
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  54978951 tataattaattaatttatttagctatttaagcctaaac 54978988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 8614845 - 8614810
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaa 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8614845 tataattaattaatttatttagctatttaagcctaa 8614810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 2073431 - 2073473
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  2073431 tataattaaataatttatttagctatttaagcctaaactaaaa 2073473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 14595625 - 14595587
Alignment:
Q  178 ttaatttatttagctatttaagcctaaacgaaaaaacta 216  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  14595625 ttaatttatttagctatttaagcctaaacctaaaaacta 14595587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 34459436 - 34459478
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  34459436 tataattaaataatttatttagctatttaagcctaaactaaaa 34459478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 2224762 - 2224799
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  2224762 tataattaattaatttatttagctatttaagcttaaac 2224799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 7117760 - 7117820
Alignment:
Q  168 atataactaattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataa 229  Q
    |||||| |||||||||||||||||||||||| | |||||   ||| ||||||||||||||||    
T  7117760 atataattaattaatttatttagctatttaaacataaac-ctaaacctacttaatacaataa 7117820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 8066263 - 8066226
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  8066263 tataattaattaatttatttagctatttaagtctaaac 8066226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 7250409 - 7250441
Alignment:
Q  179 taatttatttagctatttaagcctaaacgaaaa 211  Q
    |||||||||||||||||||||||||||| ||||    
T  7250409 taatttatttagctatttaagcctaaactaaaa 7250441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 42755646 - 42755610
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  42755646 tataattaattaattaatttagctatttaagcctaaa 42755610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 2465392 - 2465452
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataa 229  Q
    ||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  2465392 tataattaattaatttatttagctatttaagtctaaacctaaaaactacttaatacaataa 2465452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 236800 - 236743
Alignment:
Q  175 taattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataacag 232  Q
    ||||||||| ||||||||||||||  |||||| |||||| ||||||||||||||||||    
T  236800 taattaattaatttagctatttaaatctaaaccaaaaaattacttaatacaataacag 236743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 9222538 - 9222501
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  9222538 tataattaattaatttatttagctatttaagcctaaac 9222501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 44327744 - 44327781
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  44327744 tataattaattaatttatttagctatttaagcctaaac 44327781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 12560428 - 12560464
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| |||||||||||||||||||||||||||||||    
T  12560428 tataattaattaatttatttagctatttaagcctaaa 12560464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 945775 - 945733
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  945775 tataattaaataatttatttagctatttaagcctaaactaaaa 945733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 2975059 - 2975101
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  2975059 tataattaaataatttatttagctatttaagcctaaactaaaa 2975101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 25059396 - 25059354
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  25059396 tataattaaataatttatttagctatttaagcctaaactaaaa 25059354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 32835323 - 32835365
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  32835323 tataattaaataatttatttagctatttaagcctaaactaaaa 32835365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 611005 - 610968
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  611005 tataattaattaatttattaagctatttaagcctaaac 610968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 13796884 - 13796921
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  13796884 tataattaattaattaatttagctatttaagcctaaac 13796921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 25815137 - 25815174
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  25815137 tataattaattattttatttagctatttaagcctaaac 25815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 29054417 - 29054454
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29054417 tataattaattaatttatttaactatttaagcctaaac 29054454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 2433507 - 2433471
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  2433507 tataattaattaatttatttaactatttaagcctaaa 2433471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 2501862 - 2501826
Alignment:
Q  168 atataactaattaatttatttagctatttaagcctaa 204  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  2501862 atataattaattaatttatttagctatttaagtctaa 2501826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 19506669 - 19506637
Alignment:
Q  179 taatttatttagctatttaagcctaaacgaaaa 211  Q
    |||||||||||||||||||||||||||| ||||    
T  19506669 taatttatttagctatttaagcctaaactaaaa 19506637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 24430141 - 24430196
Alignment:
Q  175 taattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataac 230  Q
    |||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  24430141 taattaatgtatttaactatttaagcctaaacctaaaaactacttaatacaataac 24430196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 16567869 - 16567832
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  16567869 tataattaattaatttatttagctatttaagcctaaac 16567832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 16597793 - 16597830
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  16597793 tataattaattaatttatttagctatttaagcctaaac 16597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 27398891 - 27398854
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  27398891 tataattaattaatttatttagctatttaagcctaaac 27398854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 31455202 - 31455165
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  31455202 tataattaattaatttatttagctatttaagcctaaac 31455165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 39414867 - 39414830
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  39414867 tataattaattaatttatttagctatttaagcctaaac 39414830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 46181515 - 46181478
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46181515 tataattaattaatttatttagctatttaagcctaaac 46181478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 46783370 - 46783333
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46783370 tataattaattaatttatttagctatttaagcctaaac 46783333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 3551345 - 3551381
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| |||||||||||||||||||||||||||||||    
T  3551345 tataattaattaatttatttagctatttaagcctaaa 3551381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 3551381 - 3551419
Alignment:
Q  193 atttaagcctaaacgaaaaaactacttaatacaataaca 231  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  3551381 atttaaacctaaaccaaaaaactacttaatacaataaca 3551419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 35092548 - 35092586
Alignment:
Q  168 atataactaattaatttatttagctatttaagcctaaac 206  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  35092548 atataaataattaatttatttaactatttaagcctaaac 35092586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 10066069 - 10066106
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  10066069 tataattaattaatttatttaactatttaagcctaaac 10066106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 12920810 - 12920846
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  12920810 tataattaattaattaatttagctatttaagcctaaa 12920846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 43394127 - 43394175
Alignment:
Q  175 taattaatttatttagctatttaagcctaaacgaaaaaactacttaata 223  Q
    ||||||||||| ||| ||||||||||||||||  ||||||| |||||||    
T  43394127 taattaatttacttaactatttaagcctaaacctaaaaactccttaata 43394175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 28770107 - 28770057
Alignment:
Q  181 atttatttagctatttaagcctaaacgaaaaaactacttaatacaataaca 231  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  28770107 atttatttagctatttaaacctaaataaaaaaactacttaatacaataaca 28770057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 13534000 - 13534031
Alignment:
Q  175 taattaatttatttagctatttaagcctaaac 206  Q
    ||||||||||||||||||||||||||||||||    
T  13534000 taattaatttatttagctatttaagcctaaac 13534031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 29641271 - 29641309
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacg 207  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29641271 tataattaattaatttatttagctatttaatcctaaacg 29641309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 1329367 - 1329404
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  1329367 tataattaattaattaatttagctatttaagcctaaac 1329404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 6337489 - 6337452
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  6337489 tataattaattaattaatttagctatttaagcctaaac 6337452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 33328891 - 33328854
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  33328891 tataattaattaatttatttagttatttaagcctaaac 33328854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 33331903 - 33331866
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  33331903 tataattaattaatttatttagttatttaagcctaaac 33331866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 6938334 - 6938302
Alignment:
Q  179 taatttatttagctatttaagcctaaacgaaaa 211  Q
    |||||||||||||||||||||||||||| ||||    
T  6938334 taatttatttagctatttaagcctaaactaaaa 6938302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 24488904 - 24488941
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24488904 tataactaattaatttatttagctatttaagcctaaac 24488941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 36323306 - 36323270
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36323306 tataattaattaatttatttagctatttaagcctaaa 36323270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 41983530 - 41983470
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaaaactacttaatacaataaca 231  Q
    ||||| ||| |||||||||||| |||||||||||||||   |||||| |||||||||||||||    
T  41983530 tataattaaataatttatttagatatttaagcctaaac--taaaactgcttaatacaataaca 41983470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 6224657 - 6224699
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  6224657 tataattaaataatttatttagctatttaagcctaaactaaaa 6224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 14088564 - 14088530
Alignment:
Q  169 tataactaattaatttatttagctatttaagccta 203  Q
    ||||| |||||||||||||||||||||||||||||    
T  14088564 tataattaattaatttatttagctatttaagccta 14088530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 18595657 - 18595615
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  18595657 tataattaaataatttatttagctatttaagcctaaactaaaa 18595615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 22632058 - 22632100
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  22632058 tataattaaataatttatttagctatttaagcctaaactaaaa 22632100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 15719003 - 15719040
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  15719003 tataattaattaattaatttagctatttaagcctaaac 15719040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 36470312 - 36470349
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  36470312 tataattaattaatttattttgctatttaagcctaaac 36470349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 4572564 - 4572528
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  4572564 tataaataattaatttatttagctatttaagtctaaa 4572528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 29456077 - 29456045
Alignment:
Q  179 taatttatttagctatttaagcctaaacgaaaa 211  Q
    |||||||||||||||||||||||||||| ||||    
T  29456077 taatttatttagctatttaagcctaaactaaaa 29456045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 6408866 - 6408829
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6408866 tataattaattaatttatttagctatttaagcctaaac 6408829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 24987223 - 24987260
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  24987223 tataattaattaatttatttagctatttaagcctaaac 24987260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 41924261 - 41924224
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41924261 tataattaattaatttatttagctatttaagcctaaac 41924224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 2150523 - 2150570
Alignment:
Q  183 ttatttagctatttaagcctaaacgaaaaaactacttaatacaataac 230  Q
    |||||||| |||||||||||||||  ||||||||||||||||| ||||    
T  2150523 ttatttagttatttaagcctaaacctaaaaactacttaatacagtaac 2150570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 14418505 - 14418470
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaa 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  14418505 tataattaattaatttatttagctatttaagcctaa 14418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 11672021 - 11671979
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  11672021 tataattaaataatttatttagctatttaagcctaaactaaaa 11671979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 12905906 - 12905864
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  12905906 tataattaaataatttatttagctatttaagcctaaactaaaa 12905864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 23298144 - 23298186
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  23298144 tataattaaataatttatttagctatttaagcctaaactaaaa 23298186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 39952803 - 39952761
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  39952803 tataattaaataatttatttagctatttaagcctaaactaaaa 39952761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 48080345 - 48080303
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  48080345 tataattaaataatttatttagctatttaagcctaaactaaaa 48080303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 50508688 - 50508730
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  50508688 tataattaaataatttatttagctatttaagcctaaactaaaa 50508730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 39352751 - 39352714
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  39352751 tataattaattaatttatttagttatttaagcctaaac 39352714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 44792454 - 44792491
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  44792454 tataattaattaatttatttagctgtttaagcctaaac 44792491  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 46584857 - 46584820
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  46584857 tataattaattaatttatttagctatttaagcccaaac 46584820  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 49360246 - 49360209
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  49360246 tataattaattaatttatttagctatttcagcctaaac 49360209  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 5040880 - 5040912
Alignment:
Q  179 taatttatttagctatttaagcctaaacgaaaa 211  Q
    |||||||||||||||||||||||||||| ||||    
T  5040880 taatttatttagctatttaagcctaaactaaaa 5040912  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 19618976 - 19618940
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaa 205  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  19618976 tataattaatttatttatttagctatttaagcctaaa 19618940  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 3329456 - 3329419
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3329456 tataattaattaatttatttagctatttaagcctaaac 3329419  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 4481350 - 4481313
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  4481350 tataattaattaatttatttagctatttaagcctaaac 4481313  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 17961266 - 17961303
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  17961266 tataattaattaatttatttagctatttaagcctaaac 17961303  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 23232028 - 23231991
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  23232028 tataattaattaatttatttagctatttaagcctaaac 23231991  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 30241721 - 30241684
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30241721 tataattaattaatttatttagctatttaagcctaaac 30241684  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 33867357 - 33867394
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33867357 tataattaattaatttatttagctatttaagcctaaac 33867394  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 667783 - 667825
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  667783 tataattaaataatttatttagctatttaagcctaaactaaaa 667825  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 4592005 - 4592042
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  4592005 tataattaattaattaatttagctatttaagcctaaac 4592042  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 12758051 - 12758014
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  12758051 tataattaattaattaatttagctatttaagcctaaac 12758014  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 29155613 - 29155576
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  29155613 tataattaatttatttatttagctatttaagcctaaac 29155576  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 25178777 - 25178844
Alignment:
Q  169 tataactaattaatttatttagctatt------taagcctaaacgaaaaaactacttaatacaataac 230  Q
    ||||| |||||||||||||||||||||      |||||||||||| ||||||||||||||| ||||||    
T  25178777 tataattaattaatttatttagctatttaagcctaagcctaaacgtaaaaactacttaatagaataac 25178844  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 1667462 - 1667420
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  1667462 tataattaaataatttatttagctatttaagcctaaactaaaa 1667420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 6109918 - 6109876
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaacgaaaa 211  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||    
T  6109918 tataattaaataatttatttagctatttaagcctaaactaaaa 6109876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 30801507 - 30801469
Alignment:
Q  193 atttaagcctaaacgaaaaaactacttaatacaataaca 231  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  30801507 atttaaacctaaaccaaaaaactacttaatacaataaca 30801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 3616682 - 3616719
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  3616682 tataattaattaatttatttaactatttaagcctaaac 3616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 7057904 - 7057867
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  7057904 tataattaattaatttatttaactatttaagcctaaac 7057867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 24789809 - 24789772
Alignment:
Q  169 tataactaattaatttatttagctatttaagcctaaac 206  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  24789809 tataattaattaattaatttagctatttaagcctaaac 24789772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 30801543 - 30801510
Alignment:
Q  169 tataactaattaatttatttagctatttaagcct 202  Q
    ||||||||||||||| ||||||||||||||||||    
T  30801543 tataactaattaattaatttagctatttaagcct 30801510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 2620783 - 2620815
Alignment:
Q  179 taatttatttagctatttaagcctaaacgaaaa 211  Q
    |||||||||||||||||||||||||||| ||||    
T  2620783 taatttatttagctatttaagcctaaactaaaa 2620815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 221753 - 221791
Alignment:
Q  178 ttaatttatttagctatttaagcctaaacgaaaaaacta 216  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  221753 ttaatttatttagctatttaagcctaaacctaaaaacta 221791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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