View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_43 (Length: 237)
Name: NF16976_low_43
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 39188640 - 39188421
Alignment:
| Q |
1 |
cattggttagcagggttaaacgttacactcttctatgaataattttcaaattcctaacgtgtttttagaacattgttt--caaggatttaaataagaatg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39188640 |
cattggttagcagggttaaacgttacactcttctatgaataattttcaaattcctcacgtgtttttagaacattgtttagcaaggatttaaataagaatg |
39188541 |
T |
|
| Q |
99 |
atgtcnnnnnnnnnnnnnnnnnnnnncctcttcttcccttttctgacttccgtctctcaacaacannnnnnnggtttgataccattgccgctttctgctg |
198 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39188540 |
atgtcttttatttttatttattttttcctcttcttcccttttctgacttccgtctctcaacaacatttttttggtttgataccattgccgctttctgctg |
39188441 |
T |
|
| Q |
199 |
catttataccaaggagatct |
218 |
Q |
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|
|||||||||||||||||||| |
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|
| T |
39188440 |
catttataccaaggagatct |
39188421 |
T |
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