View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_44 (Length: 234)
Name: NF16976_low_44
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 5698887 - 5698682
Alignment:
| Q |
14 |
caaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggattggatgctcttatagggttgaagtggcctgaacccattgaaaaaggtg |
113 |
Q |
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| T |
5698887 |
caaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggatctgatgctcttttagggtagaagtggcctgaacccattgcaaaaggtg |
5698788 |
T |
|
| Q |
114 |
ttgcaggatttcctgtttcatctgtaattggatttcctgtgttgtctgttgttttagctgcaagaataaataaatgatttagatatatcaatgaagggta |
213 |
Q |
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| T |
5698787 |
ttgcaggatttcctgtttcatctgtaattggatttcctgtgttgtctgttgttttagctgcaagaataaataaatgatttagatatatcaatgaagggta |
5698688 |
T |
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| Q |
214 |
gttttt |
219 |
Q |
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|||||| |
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| T |
5698687 |
gttttt |
5698682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 5686682 - 5686509
Alignment:
| Q |
14 |
caaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggattggatgctcttatagggttgaagtggcctgaacccattgaaaaaggtg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
5686682 |
caaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggatctgatgctcttttagggtagaagtggcctgaacccattgcaaaaggtg |
5686583 |
T |
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| Q |
114 |
ttgcaggatttcctgtttcatctgtaattggatttcctgtgttgtctgttgttttagctgcaagaataaataaa |
187 |
Q |
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||| ||| |||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
5686582 |
ttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctgttatcctagctgcaagaataattaaa |
5686509 |
T |
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