View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_46 (Length: 229)
Name: NF16976_low_46
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 40114522 - 40114305
Alignment:
| Q |
1 |
attggtcaaatctttttaacatatagatataaataaacaactcatggtaaatggagaagtaattaaatatgcccaacatataaggcatgagtgagaaagn |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40114522 |
attggtgaaatctttttaacatatagatataaataaacaactcatggtaaatggagaagtaattaaatatg---aacatataaggcatgagtgagaaag- |
40114427 |
T |
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| Q |
101 |
nnnnnnnggaatattaagannnnnnnaaccaaaagattaagattgaaaattgaaaattgaaaacttgaatgaatccaacatcagcaccaaagatttgacc |
200 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114426 |
aaaaaaaggaatattaagatttttttaaccaaaagattaag-------attgaaaattgaaaacttgaatgaatccaacatcagcaccaaagatttgacc |
40114334 |
T |
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| Q |
201 |
tagtctactcgtacctatgctactcctct |
229 |
Q |
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|||||||||||||| ||| |||||||||| |
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| T |
40114333 |
tagtctactcgtacttatactactcctct |
40114305 |
T |
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