View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_8 (Length: 467)
Name: NF16976_low_8
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 39003909 - 39003623
Alignment:
| Q |
11 |
cacagaacagcatagccacttgtaaaattgggtctgttccccactttcaacacgttgttttgattgaagattgaagatgctgtgggtgggggtgggattg |
110 |
Q |
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| T |
39003909 |
cacagaacagcatagccacttgtaaaattgggtctgttcc--actttcaacacgttgttttgattgaagat-------gctgtgggtgggggtgggatt- |
39003820 |
T |
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| Q |
111 |
ttttgggactttgttttcttgtgatctggtggtaattcaatatgactgttgtactattagactacttttatcaataataagtggagtattataaacttga |
210 |
Q |
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| T |
39003819 |
--------------------gtgttctggt--taattcaatatgactgttgtactattagattacttttatcaataataagtggagtattataaacttga |
39003742 |
T |
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| Q |
211 |
tccctttagctaaatgaaaatcatatatatgatataaaaattaatgagaacatgtaatgaataagttcaaaaccaacaaaaacttgttcaaaaccagagt |
310 |
Q |
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| T |
39003741 |
tccctttagctaaatgaaaatcatatatatgatataaaaattaatgagaacatttaatgaataagttcaaaaccaacaaaaacttgttcaaaaccagagt |
39003642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 452
Target Start/End: Complemental strand, 39003541 - 39003502
Alignment:
| Q |
413 |
cgtccaaattcagatttttaaactaatggataaaaagggt |
452 |
Q |
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| T |
39003541 |
cgtccaaattcagatttttaaactaatggataaaaagggt |
39003502 |
T |
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