View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16977_high_4 (Length: 413)
Name: NF16977_high_4
Description: NF16977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16977_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 18029048 - 18029435
Alignment:
| Q |
8 |
cagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagattctggtcacatgaatgggagaaacatggtac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18029048 |
cagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagattctggtcacatgaatgggagaaacatggtac |
18029147 |
T |
|
| Q |
108 |
atgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaacttaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18029148 |
atgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaacttaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaac |
18029247 |
T |
|
| Q |
208 |
aagacatgattttgaagcatctcatatgctatgaagcgctaacacaaacattgacataacacacgacacgtagacaccaataataatattagcaaatcga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
18029248 |
aagacatgattttgaagcatctcatatgctatgaagcgctaacacaaacattgacataacacacgacacgtagacaccaataataatattagaaaattga |
18029347 |
T |
|
| Q |
308 |
agtaattgaatgtagtcacttgtatcagaaggcaagttttgtttctgacacgacaatgacacgtgtgattaaattctattatatcatt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
18029348 |
agtaattgaatgtagtcacttgtatcagaaggcaagttttgtttctgacacgacaatgacacatgtgattaaattcaactatatcatt |
18029435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 18034871 - 18035050
Alignment:
| Q |
34 |
aattggccatctctgagctgtccaagtagcaatggttttagattctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaac |
133 |
Q |
| |
|
|||||||||||| ||||||| || ||| | |||||| ||||| | ||||||||||||||| |||||||||||| ||| |||||||| ||||| ||||| |
|
|
| T |
18034871 |
aattggccatctttgagctgccctagtggaaatggtattagactttggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaac |
18034970 |
T |
|
| Q |
134 |
atgagtactttgaaactgctcttaaacttaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaacaagaca |
213 |
Q |
| |
|
|||| |||||| |||| ||||| ||||| ||| | ||| | || || || |||| ||| | ||||||||||||||||||| |
|
|
| T |
18034971 |
atgactactttcaaacagctctcaaactcaagaaaaaatcgaatcttctccagatccttaagaatgcaggtaacaagaca |
18035050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 18052596 - 18052739
Alignment:
| Q |
79 |
tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaacttaaggagaaagcaaacc |
178 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| |||||||| ||||| ||||||||| |||||| |||| ||||| ||||| ||| | ||| |||| |
|
|
| T |
18052596 |
tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaacc |
18052695 |
T |
|
| Q |
179 |
tccttcagagcctcacgaatgcaggtaacaagacatgattttga |
222 |
Q |
| |
|
| ||||| | || | | | |||||||||||||||||||||||| |
|
|
| T |
18052696 |
ttcttcaaatgcttaaggacgcaggtaacaagacatgattttga |
18052739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 18047613 - 18047695
Alignment:
| Q |
79 |
tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaact |
161 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||| ||||| ||||||||| |||||| |||| ||||| ||||| |
|
|
| T |
18047613 |
tggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaact |
18047695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 17999654 - 17999728
Alignment:
| Q |
75 |
attctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaac |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| ||||||| | ||| | |||||||| || |||||||| |
|
|
| T |
17999654 |
attctggacacatgaatgggagaaacatggtacttgttcagaatcagttcttaagcaacatgattattttgaaac |
17999728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 3616803 - 3616899
Alignment:
| Q |
9 |
agacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagattctggtcacatgaatgggagaaacatggt |
105 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3616803 |
agacctaattaagaacatgtagaagaattgaccatctttgagctgtccaagcagcaattgttttagattctagtcacatgaatgggagaaacatggt |
3616899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University