View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16977_high_6 (Length: 239)
Name: NF16977_high_6
Description: NF16977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16977_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 41896397 - 41896178
Alignment:
| Q |
20 |
gaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagc |
119 |
Q |
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| T |
41896397 |
gaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagc |
41896298 |
T |
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| Q |
120 |
cacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcact |
219 |
Q |
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| T |
41896297 |
cacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcact |
41896198 |
T |
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| Q |
220 |
tgtagttttgtcttgatgat |
239 |
Q |
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|||||||||||||||||||| |
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| T |
41896197 |
tgtagttttgtcttgatgat |
41896178 |
T |
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