View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16977_high_8 (Length: 209)
Name: NF16977_high_8
Description: NF16977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16977_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 42006393 - 42006185
Alignment:
| Q |
1 |
ctatcagattctccaatccaaccccacaaaactctcctatcctttttctgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtc |
100 |
Q |
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| T |
42006393 |
ctatcagattctccaatccaaccccacaaaactctcctatcctttttctgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtc |
42006294 |
T |
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| Q |
101 |
caataccaacatcatttttcaaatcatctgctgtgaacttaaccttcttctcatcataagttcccaatgaatagtaatcatgtctatcatcatccaagct |
200 |
Q |
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| T |
42006293 |
caataccaacatcatttttcaaatcatctgctgtgaacttaaccttcttctcatcataatttcccaatgaatagtaatcatgtctatcatcatccaagct |
42006194 |
T |
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| Q |
201 |
caccttcat |
209 |
Q |
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||||||||| |
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| T |
42006193 |
caccttcat |
42006185 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 42591103 - 42591050
Alignment:
| Q |
49 |
tgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtcca |
102 |
Q |
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|||||| |||||| ||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
42591103 |
tgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtcca |
42591050 |
T |
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