View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16977_low_1 (Length: 801)
Name: NF16977_low_1
Description: NF16977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16977_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 179 - 766
Target Start/End: Original strand, 11113339 - 11113924
Alignment:
| Q |
179 |
gtaaagctaagagaataagaaccactatattgaatgagtatgtatgtactgttcttttattgtattaatgaaagaaaacttgtccaatttgaaagcatat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11113339 |
gtaaagctaagagaataagaaccactatattgaatgagtatgtatgtactgttcttttattgtattaatgaaagaaaacttgtccaatttgaaagcatat |
11113438 |
T |
|
| Q |
279 |
gtattttgtttgtttgcatgtagctctaatacgagaattgatgtcttgtaaggatagaccacgtatataannnnnnnccccatttattcacttgggttca |
378 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
11113439 |
gtattttgtttgtttgcatgtagctctattacgagaattgatgtcttgtaaggatagaccacgtatataattttttcccctatttattcactggggttca |
11113538 |
T |
|
| Q |
379 |
agtgtagaaaactatttaagaacactgtgaaagtgtgagacaatcataatatgcaaccatcatcggcagcttcatatatgtcactgattgcattagattc |
478 |
Q |
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||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11113539 |
agtgtagaa--ctatttaagaacacggtgaaagtgtgacacaatcataatatgcaaccatcatcggcagcttcatgtatgtcactgattgcattagattc |
11113636 |
T |
|
| Q |
479 |
gacagtgcctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaatgagcattttacgaaattatggtgcgaggaagaaaatggtttagtcg |
578 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11113637 |
aacagtgcctatgttgtgggattgttgtgcaggtttgtcagttgacctagtaatgagcattttacgaaattatggttcgaggaagaaaatggtttagtcg |
11113736 |
T |
|
| Q |
579 |
ggaggtctgctagttggtgacttgttgcatgagagaaacattgagttgcttggcttctagcaggtcaggtaccaaatgataatttacgatcaagagtttt |
678 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
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| T |
11113737 |
ggaggtctgccaattggtgacttgttgcatgagagaaacattgagttgcttggctgctagcaggtcacgtgccaaatgataatttacgatcaagagtttc |
11113836 |
T |
|
| Q |
679 |
atgtaggaatgaaatgaaggattattacatcaataagttgtctgagtaggttttaggtgtatcaatcaattgaacactgatttctagc |
766 |
Q |
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| T |
11113837 |
atgtaggaatgaaatgaagggttattacatcaataagttgtctgagtaggttttaggtgtatcaatcaattgaacactgatttctagc |
11113924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 11113178 - 11113281
Alignment:
| Q |
18 |
acatggatgataaatttgggattactctacaaaaggctcaaccacttcgaattgttcctctcaaactaagtaactaacacaacacataagtgtctttcca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11113178 |
acatggatgataaatttgggattactctacgggaggctcaaccacttcgaattgttcctctcaaactaagtaactaacacaacacacaagtgtctttcca |
11113277 |
T |
|
| Q |
118 |
tatc |
121 |
Q |
| |
|
|||| |
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|
| T |
11113278 |
tatc |
11113281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 11106302 - 11106221
Alignment:
| Q |
18 |
acatggatgataaatttgggattactctacaaaaggctcaaccacttcgaattgttcctctcaaactaagtaactaacacaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11106302 |
acatggatgataaatttgggattactctacaaaaggctcaaccccttcgaattgttcctctcaaactaagtaactaacacaa |
11106221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 386 - 532
Target Start/End: Original strand, 8718157 - 8718304
Alignment:
| Q |
386 |
aaaactatttaagaacactg-tgaaagtgtgagacaatcataatatgcaaccatcatcggcagcttcatatatgtcactgattgcattagattcgacagt |
484 |
Q |
| |
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||||||||| |||||||||| | ||||| ||||||||||| ||||| ||| ||||| |||| |||| ||||||| |||||||| |||| ||||| | |
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| T |
8718157 |
aaaactattcaagaacactggtaaaagtttgagacaatcagaatatacaagtatcattcacagcctcatgtatgtcattgattgcactagacccgacatt |
8718256 |
T |
|
| Q |
485 |
gcctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaat |
532 |
Q |
| |
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| ||| || |||||| |||||||||||||||||||| |||||| |||| |
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| T |
8718257 |
gactaggtcgtgggaatgttgtgcaggtttgtcagtagacctaataat |
8718304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 386 - 539
Target Start/End: Original strand, 6009681 - 6009835
Alignment:
| Q |
386 |
aaaactatttaagaacactg-tgaaagtgtgagacaatcataatatgcaaccatcatcggcagcttcatatatgtcactgattgcattagattcgacagt |
484 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| | ||||||||| |||||| | ||| |||| ||||||||| |||||| | | ||||| | |
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| T |
6009681 |
aaaactatttaagaacactggtgaaagtgtaagacagatagaatatgcaagcatcattgacagtctcatgtatgtcactaattgcaccacacccgacatt |
6009780 |
T |
|
| Q |
485 |
gcctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaatgagcatt |
539 |
Q |
| |
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| ||||||| ||||| |||||||| ||||| ||| ||||| |||||||||||| |
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| T |
6009781 |
gtctatgttatgggaaagttgtgcatatttgttagtagacctggtaatgagcatt |
6009835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 40836092 - 40836040
Alignment:
| Q |
486 |
cctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaatgagcat |
538 |
Q |
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|||||||||| || ||||||||||||||||||||| |||||| |||||||||| |
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| T |
40836092 |
cctatgttgtagggttgttgtgcaggtttgtcagtagacctactaatgagcat |
40836040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 386 - 535
Target Start/End: Original strand, 24944483 - 24944634
Alignment:
| Q |
386 |
aaaactatttaagaacactg-tgaaagtgtgagacaatcataatatgcaaccatcatcggcagcttcatatatgtcactgattgcattagattcgacagt |
484 |
Q |
| |
|
|||| |||| |||||||||| ||| ||||||||||||||| |||||||| || || ||||| |||| |||| ||||||||||| |||| |||||| | |
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| T |
24944483 |
aaaaatattcaagaacactggtgacagtgtgagacaatcaaaatatgcatgcaatatttgcagcctcatgtatgccactgattgcactagactcgacatt |
24944582 |
T |
|
| Q |
485 |
gcct-atgttgtgggattgttgtgcaggtttgtcagtcgacctagtaatgag |
535 |
Q |
| |
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| || |||| | |||| | |||| ||||||||||||| || |||||||||| |
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| T |
24944583 |
gtctaatgtcgcgggactattgtccaggtttgtcagtaaacttagtaatgag |
24944634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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