View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16977_low_5 (Length: 269)

Name: NF16977_low_5
Description: NF16977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16977_low_5
NF16977_low_5
[»] chr7 (1 HSPs)
chr7 (5-253)||(5939596-5939844)
[»] chr4 (2 HSPs)
chr4 (51-100)||(9845098-9845147)
chr4 (150-194)||(18573522-18573566)
[»] chr8 (2 HSPs)
chr8 (150-197)||(26263756-26263801)
chr8 (51-79)||(32168712-32168740)
[»] chr2 (1 HSPs)
chr2 (166-198)||(22892365-22892397)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 5939596 - 5939844
Alignment:
Q  5 ccaagaatataaaatatatgaaatcataagcatgctattttagtattggttttaaattgcagtctgcaaccgcaatataaagaatcttgaggtctctgaa 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  5939596 ccaaaaatataaaatatatgaaatcataagcatgctattttagtattggttttaaattgcagtctgcaactgcaatattaagaattttgaggtctctgaa 5939695  T
Q  105 acggaaatttagatcatatagaccatattttccataattttgcttcaatataaaggtttgcagtgtaaccgcgactgcaatttaaaaccatgattcttgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||    
T  5939696 acggaaatttagatcatatagaccatattttccataattttgcttcaatataaagatttgcagtgtaaccgcgaccgcaatttaaaaccatgattctagt 5939795  T
Q  205 tgacaatgcggttaaaaagcacatatttacctttaagggcagtggtgaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5939796 tgacaatgcggttaaaaagcacatatttacctttaagggcagtggtgaa 5939844  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 9845098 - 9845147
Alignment:
Q  51 tggttttaaattgcagtctgcaaccgcaatataaagaatcttgaggtctc 100  Q
    ||||||| |||||||||||||| ||||||||||||| || ||||||||||    
T  9845098 tggttttgaattgcagtctgcagccgcaatataaaggattttgaggtctc 9845147  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 18573522 - 18573566
Alignment:
Q  150 caatataaaggtttgcagtgtaaccgcgactgcaatttaaaacca 194  Q
    |||||||||||||||||  |||||||  |||||||||||||||||    
T  18573522 caatataaaggtttgcaacgtaaccgtaactgcaatttaaaacca 18573566  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 26263756 - 26263801
Alignment:
Q  150 caatataaaggtttgcagtgtaaccgcgactgcaatttaaaaccatga 197  Q
    ||||| || |||||||||||||||||||||  ||||||||||||||||    
T  26263756 caatacaatggtttgcagtgtaaccgcgac--caatttaaaaccatga 26263801  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 32168712 - 32168740
Alignment:
Q  51 tggttttaaattgcagtctgcaaccgcaa 79  Q
    |||||||||||||||||||||||||||||    
T  32168712 tggttttaaattgcagtctgcaaccgcaa 32168740  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 22892397 - 22892365
Alignment:
Q  166 agtgtaaccgcgactgcaatttaaaaccatgat 198  Q
    |||||||||||||| ||||||||||||||||||    
T  22892397 agtgtaaccgcgaccgcaatttaaaaccatgat 22892365  T

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