View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16977_low_8 (Length: 226)
Name: NF16977_low_8
Description: NF16977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16977_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9935559 - 9935334
Alignment:
| Q |
1 |
tcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcacc |
100 |
Q |
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| T |
9935559 |
tcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccattgcacc |
9935460 |
T |
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| Q |
101 |
aagtccaccggaagttaaccactgcctaggtctcttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatca |
200 |
Q |
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| T |
9935459 |
aagtccaccagaagttaaccactgcctaggtctcttgtatttgtagaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatca |
9935360 |
T |
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| Q |
201 |
ccattagttaactcttcaagcatctt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9935359 |
ccattagttaactcttcaagcatctt |
9935334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 3472912 - 3472799
Alignment:
| Q |
72 |
gcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcctaggtctcttgtatttgtaaaattgagcagcccacatttgatgtt |
171 |
Q |
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| T |
3472912 |
gcagccggcaatccaaatcccatagcgccaagaccagcagatgtcaaccactgccttggtctcttgtacctataaaactgagcagcccacatctgatgtt |
3472813 |
T |
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| Q |
172 |
gtccaacaccagta |
185 |
Q |
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| T |
3472812 |
gtccaacaccagta |
3472799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45477505 - 45477284
Alignment:
| Q |
1 |
tcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcacc |
100 |
Q |
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|||||| |||||||||||| |||||||| ||||| || || |||| ||||||||||| || ||||| || |||||||||||||| |||||||| ||||| |
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| T |
45477505 |
tcatcataaaactaccatccccgtcaatatcaacgacaattgcatcagggttagcaacagcagcaccgatagcagcaggtaatccaaaacccatggcacc |
45477406 |
T |
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| Q |
101 |
aagtccaccggaagttaaccactgcctaggtctcttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatca |
200 |
Q |
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| T |
45477405 |
aagtccaccagaagttaaccactgcctaggtctcttatacttgtaaaactgagcagaccacatttgatgctgtccaacaccagtactaacaatagcgtca |
45477306 |
T |
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| Q |
201 |
ccattagttaactcttcaagca |
222 |
Q |
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||||| || ||||| ||||||| |
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| T |
45477305 |
ccattcgtcaactcatcaagca |
45477284 |
T |
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