View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16978_high_10 (Length: 327)

Name: NF16978_high_10
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16978_high_10
NF16978_high_10
[»] chr8 (1 HSPs)
chr8 (1-327)||(38016124-38016454)
[»] chr6 (4 HSPs)
chr6 (69-190)||(4436401-4436521)
chr6 (179-235)||(4436327-4436383)
chr6 (261-327)||(4091919-4091984)
chr6 (261-327)||(4435698-4435763)
[»] chr5 (2 HSPs)
chr5 (69-190)||(37718639-37718759)
chr5 (180-235)||(37718778-37718833)
[»] chr3 (3 HSPs)
chr3 (69-190)||(46594317-46594437)
chr3 (179-235)||(46594455-46594511)
chr3 (261-327)||(46595075-46595140)
[»] chr1 (4 HSPs)
chr1 (179-235)||(26496545-26496601)
chr1 (260-327)||(16960947-16961013)
chr1 (261-327)||(25868896-25868961)
chr1 (122-190)||(26496619-26496686)
[»] chr4 (2 HSPs)
chr4 (179-235)||(47521828-47521884)
chr4 (261-327)||(47521181-47521246)
[»] scaffold0405 (1 HSPs)
scaffold0405 (62-96)||(13222-13256)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 38016124 - 38016454
Alignment:
Q  1 aacaaaatgaaacagatgtgcaaattccatctaactacttaaaaattccaatggaatattgtcctcattgtcatattcagaaattggagaagaaacgaca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38016124 aacaaaatgaaacagatgtgcaaattccatctaattacttaaaaattccaatggaatattgtcctcattgtcatattcagaaattggagaagaaacaaca 38016223  T
Q  101 caaagttaattttaaattccaatcataatgagagttattacattttccatgcattgatttaagaaatgcacgtgaaagaaaataagaatgaaacttgcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38016224 caaagttaattttaaattccaatcataatgagagttattaccttttccatgcattgatttaagaaatgcacgtgaaagaaaataagaatgaaatttgcct 38016323  T
Q  201 caagtaagttcttgtgatctttttattgaacaatttcttttgattaaacaaaaccc----tcaattctttttaccactttttattctcaaaatgaccatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||||||||||||| ||||||    
T  38016324 caagtaagttcttgtgatctttttattgaacaatttcttttgattaaacaaaaccctccatccattctttttaccactttttattctcaaaatcaccatt 38016423  T
Q  297 gtttgcccaatacaatccacaaaatacaaaa 327  Q
    ||||||||||||||| |||||||||||||||    
T  38016424 gtttgcccaatacaaaccacaaaatacaaaa 38016454  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 4436521 - 4436401
Alignment:
Q  69 tgtcatattcagaaattggagaagaaacgacacaaagttaattttaaattccaatcataatgagagttattacattttccatgcattgatttaagaaatg 168  Q
    |||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  4436521 tgtcatattctgaaattggagaaaaaacaaccctaagttaattttaaattccaatcataatgagagttattaccttttccatgacttga-ttaagaaatg 4436423  T
Q  169 cacgtgaaagaaaataagaatg 190  Q
    ||| |  |||||||||||||||    
T  4436422 cacatagaagaaaataagaatg 4436401  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 4436383 - 4436327
Alignment:
Q  179 aaaataagaatgaaacttgcctcaagtaagttcttgtgatctttttattgaacaatt 235  Q
    |||||||||||||   |||||||||||||||||||||||||||||||| ||||||||    
T  4436383 aaaataagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaatt 4436327  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 4091984 - 4091919
Alignment:
Q  261 ttctttttaccactttttattctcaaaatgaccattgtttgcccaatacaatccacaaaatacaaaa 327  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||||| || | |||||||||||||    
T  4091984 ttctttttaccactttttattctcaaaaataccattgtttgttcaatataa-caacaaaatacaaaa 4091919  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 4435763 - 4435698
Alignment:
Q  261 ttctttttaccactttttattctcaaaatgaccattgtttgcccaatacaatccacaaaatacaaaa 327  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||||| || | |||||||||||||    
T  4435763 ttctttttaccactttttattctcaaaaataccattgtttgttcaatataa-caacaaaatacaaaa 4435698  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 37718639 - 37718759
Alignment:
Q  69 tgtcatattcagaaattggagaagaaacgacacaaagttaattttaaattccaatcataatgagagttattacattttccatgcattgatttaagaaatg 168  Q
    |||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  37718639 tgtcatattctgaaattggagaaaaaacaaccctaagttaattttaaattccaatcataatgagagttattaccttttccatgacttga-ttaagaaatg 37718737  T
Q  169 cacgtgaaagaaaataagaatg 190  Q
    ||| |  |||||||||||||||    
T  37718738 cacatagaagaaaataagaatg 37718759  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 37718778 - 37718833
Alignment:
Q  180 aaataagaatgaaacttgcctcaagtaagttcttgtgatctttttattgaacaatt 235  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  37718778 aaataagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaatt 37718833  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 46594317 - 46594437
Alignment:
Q  69 tgtcatattcagaaattggagaagaaacgacacaaagttaattttaaattccaatcataatgagagttattacattttccatgcattgatttaagaaatg 168  Q
    |||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  46594317 tgtcatattctgaaattggagaaaaaacaaccctaagttaattttaaattccaatcataatgagagttattaccttttccatgacttga-ttaagaaatg 46594415  T
Q  169 cacgtgaaagaaaataagaatg 190  Q
    ||| |  |||||||||||||||    
T  46594416 cacatagaagaaaataagaatg 46594437  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 46594455 - 46594511
Alignment:
Q  179 aaaataagaatgaaacttgcctcaagtaagttcttgtgatctttttattgaacaatt 235  Q
    |||||||||||||   |||||||||||||||||||||||||||||||| ||||||||    
T  46594455 aaaataagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaatt 46594511  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 46595075 - 46595140
Alignment:
Q  261 ttctttttaccactttttattctcaaaatgaccattgtttgcccaatacaatccacaaaatacaaaa 327  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||||| || | |||||||||||||    
T  46595075 ttctttttaccactttttattctcaaaaataccattgtttgttcaatataa-caacaaaatacaaaa 46595140  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 26496601 - 26496545
Alignment:
Q  179 aaaataagaatgaaacttgcctcaagtaagttcttgtgatctttttattgaacaatt 235  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  26496601 aaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaatt 26496545  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 16960947 - 16961013
Alignment:
Q  260 attctttttaccactttttattctcaaaatgaccattgtttgcccaatacaatccacaaaatacaaaa 327  Q
    |||||||||||||||||||||||||||||  |||||||||||  ||||| || | |||||||||||||    
T  16960947 attctttttaccactttttattctcaaaaataccattgtttgttcaatataa-caacaaaatacaaaa 16961013  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 25868961 - 25868896
Alignment:
Q  261 ttctttttaccactttttattctcaaaatgaccattgtttgcccaatacaatccacaaaatacaaaa 327  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||||| || | |||||||||||||    
T  25868961 ttctttttaccactttttattctcaaaaataccattgtttgttcaatataa-caacaaaatacaaaa 25868896  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 26496686 - 26496619
Alignment:
Q  122 atcataatgagagttattacattttccatgcattgatttaagaaatgcacgtgaaagaaaataagaatg 190  Q
    |||||||||||||||||||| |||||||||  |||| | |||||||| || |  |||||||||||||||    
T  26496686 atcataatgagagttattaccttttccatgacttga-taaagaaatgaacatagaagaaaataagaatg 26496619  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 47521884 - 47521828
Alignment:
Q  179 aaaataagaatgaaacttgcctcaagtaagttcttgtgatctttttattgaacaatt 235  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||||| ||||||||    
T  47521884 aaaaaaagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaatt 47521828  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 47521246 - 47521181
Alignment:
Q  261 ttctttttaccactttttattctcaaaatgaccattgtttgcccaatacaatccacaaaatacaaaa 327  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||||| || | |||||||||||||    
T  47521246 ttctttttaccactttttattctcaaaaataccattgtttgttcaatataa-caacaaaatacaaaa 47521181  T

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Target: scaffold0405 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 13222 - 13256
Alignment:
Q  62 tcctcattgtcatattcagaaattggagaagaaac 96  Q
    |||||||||||| ||||||||||||||||||||||    
T  13222 tcctcattgtcagattcagaaattggagaagaaac 13256  T

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