View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_high_16 (Length: 264)
Name: NF16978_high_16
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 33227321 - 33227552
Alignment:
| Q |
19 |
cattcccaaaatattacatctatcaccccatctctagtctcatgaaatattttcctaataaaatacacaactccacaacctgaaattataataggttaca |
118 |
Q |
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| T |
33227321 |
cattcccaaaatattacatctatcaccccatctctagtctcatgaaatattttcctaataaaatacacaactccacaacctgaaattataataggttaca |
33227420 |
T |
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| Q |
119 |
taccttgactagaccataaaagaggagacttttagcaaggagcattacatataaaggaaaatattatgccatgcatatgaattaaatagaaggtgacata |
218 |
Q |
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| T |
33227421 |
taccttgactagaccataagagaggagacttttagcaaggagcattacatataaaggaaaatattatgccatgcatatgaattaaatagaaggtgacata |
33227520 |
T |
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| Q |
219 |
tatatagatcaatgtataattctataggtgcc |
250 |
Q |
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| T |
33227521 |
tatatagatcaatgtataattctataggtgcc |
33227552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 33224405 - 33224496
Alignment:
| Q |
19 |
cattcccaaaatattacatctatcaccccatctctagtctcatgaaatattttcctaataaaatacacaactccacaacctgaaattataat |
110 |
Q |
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| T |
33224405 |
cattcccaaaatattacatttttcatcccatctctagtctcatgaaatattttcctaatgcaataagcaactccacagccttaaattataat |
33224496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 33225234 - 33225351
Alignment:
| Q |
103 |
attataataggttacataccttgactagaccataaaagaggagacttttagcaaggagcattacatataaaggaaaatattatgccatgcatatgaatta |
202 |
Q |
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| T |
33225234 |
attataataggttacataccttgactagaggatacttgaa-agccaattagcaagcatcattacatataaaggaaaatattatgccatgtatatgaattc |
33225332 |
T |
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| Q |
203 |
aatagaaggtgacatatat |
221 |
Q |
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||| ||||||||||||||| |
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| T |
33225333 |
aatggaaggtgacatatat |
33225351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 33250593 - 33250631
Alignment:
| Q |
93 |
acaacctgaaattataataggttacataccttgactaga |
131 |
Q |
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| T |
33250593 |
acaacctgaaattataatagggtacatgccttgactaga |
33250631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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