View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16978_high_18 (Length: 249)
Name: NF16978_high_18
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 33227081 - 33227303
Alignment:
| Q |
17 |
catatatttcctggtaatgattaagaaatcttccatttttcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33227081 |
catatatttcctggtaatgattaagaaatcttccatttttcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaac |
33227180 |
T |
|
| Q |
117 |
ttaannnnnnnnnnnnnnngtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcgacacttacaatttctcaaca |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33227181 |
ttaa--tttttttttttttgtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcaacacttacaatttctcaaca |
33227278 |
T |
|
| Q |
217 |
ttcattctacacttaaattcatctc |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33227279 |
ttcattctacacttaaattcatctc |
33227303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 33224187 - 33224386
Alignment:
| Q |
39 |
aagaaatcttccatttt---tcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaannnnnnnnnnnnnnn |
135 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
33224187 |
aagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaatatataa-tgttttcgcaacaacgttaacttaaatatatatttatttt |
33224285 |
T |
|
| Q |
136 |
gtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcgacacttacaatttctcaacattcattctacacttaaatt |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| |
|
|
| T |
33224286 |
-tatcgtaaatttaatttgcacaatcatgcaaa---taattcaatgaacaatgatatttcgacactcataatttctcaaaattcattctatacttaaatt |
33224381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University