View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16978_high_20 (Length: 234)

Name: NF16978_high_20
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16978_high_20
NF16978_high_20
[»] chr4 (3 HSPs)
chr4 (15-217)||(16842950-16843152)
chr4 (18-128)||(16845838-16845948)
chr4 (27-171)||(24217866-24218010)
[»] chr5 (13 HSPs)
chr5 (18-216)||(37594211-37594409)
chr5 (27-207)||(37711520-37711700)
chr5 (18-207)||(37400962-37401151)
chr5 (25-217)||(37435589-37435793)
chr5 (18-217)||(37639753-37639958)
chr5 (18-217)||(37392966-37393165)
chr5 (78-207)||(37702615-37702744)
chr5 (18-207)||(37823776-37823971)
chr5 (27-215)||(37696611-37696805)
chr5 (18-159)||(37428612-37428754)
chr5 (99-215)||(37533062-37533184)
chr5 (8-159)||(37382473-37382624)
chr5 (27-158)||(37413395-37413526)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 16843152 - 16842950
Alignment:
Q  15 aaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16843152 aaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccaaatgtcattccatgtgtttaagagcttcttatgaaac 16843053  T
Q  115 catttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgagata 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16843052 catttgggaattttaccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcataagata 16842953  T
Q  215 aat 217  Q
    |||    
T  16842952 aat 16842950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 16845948 - 16845838
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||  |||||||| ||||| | |||||||||||||||||||||||||    
T  16845948 gccataatatggaattggaatgtctccttgcaatttgttgaaactgaggtcaatgtgtcgaatgtccttccacgagtttaagagcttcttatgaaaccat 16845849  T
Q  118 ttgggaatttt 128  Q
    || ||||||||    
T  16845848 tttggaatttt 16845838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 24218010 - 24217866
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||| |||| |||||||||||| ||||||||||| |||| |||    ||||| || |||||||||| ||||||||||| |||||||||||| |||| |    
T  24218010 tggaatcggaaggtctccttgcaacttgttgaaactgagattaataattcgaatttccttccatgtgtgtaagagcttctcatgaaaccatttaggaact 24217911  T
Q  127 tttccatgaatgttgttattggagagatctaatctttgaagattt 171  Q
    ||||| ||||| |||||||| ||||||||||||| ||| ||||||    
T  24217910 tttccttgaattttgttattagagagatctaatccttgcagattt 24217866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 37594211 - 37594409
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||| ||| |||||||||||  |||||||| || ||||||||||| |  |||||||||  ||| |||||||||| |||||||||||||||||||||||||    
T  37594211 gccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtacgaaatctcattccatgagtttaagagcttcttatgaaaccat 37594310  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgagataaa 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  37594311 ttgggaattttcccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagaataagataaa 37594409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 37711520 - 37711700
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||||||||  |||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  37711520 tggaattggaagatctccttgcaacatgttgaaactaagatcaatgtaccgaatgtccttccatgagtttaagagcttcgtatgaaaccatttgggaatt 37711619  T
Q  127 tttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagca 207  Q
    || |||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  37711620 ttcccatgaatgttgttgttggagagatctaatgtttgcagatttcgtgcttggaatttaggaaaactattaatattagca 37711700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 37401151 - 37400962
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||| ||| |||||||||||  |||||||| || ||||||||||| || || | |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  37401151 gccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtctaagtactgaatgtccttccatgagtttaagagcttcttatgaaaccat 37401052  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagca 207  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||||  |||||||||| | |||||||||||||||||||||||||||||    
T  37401051 ttgggaattttcccacgaatgttgttattggagagatataatcttttcagatttcgtgctgggaatttaggaaaactattaatattagca 37400962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 37435589 - 37435793
Alignment:
Q  25 gatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcat------------tccatgtgtttaagagcttcttatgaa 112  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| | ||| ||||            || ||||||||||||||||||||||||    
T  37435589 gatggaattggaatgtctccttgcaatttgttgaaactgaggtcaatgtaactaatttcatgggcaatatcattcaatgtgtttaagagcttcttatgaa 37435688  T
Q  113 accatttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgaga 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||  ||||||||||||||||||||||||||||||  |||    
T  37435689 accatttgggaattttcccatgaatgttgttattggagagatctaatgtttgaagtttttgtgcgtggaatttaggaaaactattaatattagcagaaga 37435788  T
Q  213 taaat 217  Q
    |||||    
T  37435789 taaat 37435793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 37639753 - 37639958
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    ||||| || |||||||||||  | |||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37639753 gccatcaggtggaattggaagatgtccttgcaacatgttgaaactaagatcaatgtaccgaatgtccttccatgtgtttaagagcttcttatgaaaccat 37639852  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatt------tcgtgtttggaatttaggaaaactattaatattagcatgag 211  Q
    ||||||||||| ||||||||||||||||||||||||||||| | ||| | |||      ||||| | ||||||| |||||||| ||||||||||||  ||    
T  37639853 ttgggaattttcccatgaatgttgttattggagagatctaaccattgcaaattatgtactcgtgctaggaatttgggaaaacttttaatattagcagaag 37639952  T
Q  212 ataaat 217  Q
    ||||||    
T  37639953 ataaat 37639958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 37393165 - 37392966
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    ||||| || |||||||||||  || ||||| || ||||||||||| || |||||||    |||||| ||||||| |||||||||||||||||||||||||    
T  37393165 gccatcaggtggaattggaagatcaccttgtaacttgttgaaactcaggtcaatgtgtataatgtccttccatgagtttaagagcttcttatgaaaccat 37393066  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgagataaat 217  Q
    ||||||||| |  ||||||||||| |||||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||| ||||  |||||||    
T  37393065 ttgggaattctcgcatgaatgttgctattggagagatctaagctttccagatttcgtgcttggaatttaggaaaactattaatattggcatatgataaat 37392966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 37702615 - 37702744
Alignment:
Q  78 aatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtt 177  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||| ||| |    
T  37702615 aatgtccttccatgagtttaagagtttcttatgaaaccatttgggaattttcccatgaatgtagttattggagagatctaatgtttgcagattttgtgct 37702714  T
Q  178 tggaatttaggaaaactattaatattagca 207  Q
    ||||||||||||||||||||||||||||||    
T  37702715 tggaatttaggaaaactattaatattagca 37702744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 37823776 - 37823971
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||| ||| |||||||||||  |||||||| || ||||||||||| || |||| | ||| |||||| ||||||| |||||||||||||||||||||||||    
T  37823776 gccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtcaacggaccaaatgtccttccatgagtttaagagcttcttatgaaaccat 37823875  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgt------gtttggaatttaggaaaactattaatattagca 207  Q
    ||||||||||| |||||||||||||| |||||||||||||||  ||| |||||| ||      | | |||||||||||||||||||||||||||||    
T  37823876 ttgggaattttcccatgaatgttgttgttggagagatctaatgattgcagatttggtagttgcgctaggaatttaggaaaactattaatattagca 37823971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 37696611 - 37696805
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||||||||  |||||||| || ||||||||||| || || | || | ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  37696611 tggaattggaagatctccttgtaacttgttgaaactgaggtctaagtcctgaatgtccttccatgagtttaagagcttcttatgaaaccatttgggaatt 37696710  T
Q  127 tttccatgaatgttgttattggagagatctaatctttgaagatttcgt------gtttggaatttaggaaaactattaatattagcatgagataa 215  Q
    || |||||||||||||| ||||||||||||||   ||| |||||| ||      | | |||||||||||||||||||||||||||||| ||||||    
T  37696711 ttcccatgaatgttgttgttggagagatctaacgattgcagatttggtagttgcgctaggaatttaggaaaactattaatattagcattagataa 37696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 37428612 - 37428754
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||||||| |||||||||||  ||||||||||| ||||||||||| ||||||| || || ||| |  ||||||| |||||||||| | ||||||||||||    
T  37428612 gccataaggtggaattggaagatctccttgcaacttgttgaaactgagatcaacgtgccaaatatacttccatgagtttaagagcattttatgaaaccat 37428711  T
Q  118 ttgggaattttt-ccatgaatgttgttattggagagatctaat 159  Q
     ||| ||||||| |||||||||||||| |||||||||||||||    
T  37428712 atggaaatttttcccatgaatgttgtttttggagagatctaat 37428754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 37533062 - 37533184
Alignment:
Q  99 gagcttcttatgaaaccatttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgt------gtttggaatttaggaaaa 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||   ||| |||||| ||      | | ||||||||||||||    
T  37533062 gagcttcttatgaaaccatttgggaattttcccatgaatgttgttgttggagagatctaacgattgcagatttggtagttgcgctaggaatttaggaaaa 37533161  T
Q  193 ctattaatattagcatgagataa 215  Q
    |||||||||||||||| ||||||    
T  37533162 ctattaatattagcattagataa 37533184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 37382624 - 37382473
Alignment:
Q  8 agtagcaaaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttctt 107  Q
    ||||| ||| |||||||  ||| |||||||  ||||||||||| ||||||||||| |||||||  |   |||||||  ||||||||| |||||||||||     
T  37382624 agtagtaaatgccataacgtgggattggaagatctccttgcaacttgttgaaactgagatcaacatgttgaatgtccctccatgtgtgtaagagcttctc 37382525  T
Q  108 atgaaaccatttgggaatttttccatgaatgttgttattggagagatctaat 159  Q
    |||||||||||| |||| ||| || ||||| ||||| || ||||||||||||    
T  37382524 atgaaaccatttaggaactttcccttgaattttgtttttagagagatctaat 37382473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 37413526 - 37413395
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||||||||  ||||||||||| ||||||||||| ||||| || |  ||||| ||  ||||||||| ||||||||||| |||||||||||| |||| |    
T  37413526 tggaattggaagatctccttgcaacttgttgaaactgagatcgatatgtcgaatttccctccatgtgtgtaagagcttctcatgaaaccatttaggaact 37413427  T
Q  127 tttccatgaatgttgttattggagagatctaa 158  Q
    ||||| |||||  ||||||| || ||||||||    
T  37413426 tttccttgaattatgttattagatagatctaa 37413395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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