View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16978_high_4 (Length: 589)
Name: NF16978_high_4
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Original strand, 2486196 - 2486769
Alignment:
| Q |
19 |
gctcatgcccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccattaccaccattaaaattccaaacattgtttgggataacg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486196 |
gctcatgcccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccattaccaccattaaaattccaaacattgtttgggataacg |
2486295 |
T |
|
| Q |
119 |
atattgctgcatttgcgcagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtggtggccgttatgg------------cgagaa |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2486296 |
atattgctgcatttgcacagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtggtggccgttatggtgagtatcttggcgagaa |
2486395 |
T |
|
| Q |
207 |
tattgccgtgagcaccggctacgtaagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgat |
306 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486396 |
tattgcggtgagcaccggctacataagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgat |
2486495 |
T |
|
| Q |
307 |
ggtcatgaatgccaccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggcacatttgttactt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2486496 |
ggtcatgaatgccaccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttactt |
2486595 |
T |
|
| Q |
407 |
gcaattatgatccccctggtaacattgctggccaattaccatactaagtgattcatatcaagaattaataatatctgggaaaatgtatgaaatgagttcc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486596 |
gcaattatgatccccctggtaacattgctggccaattaccatactaagtgattcatatcaagaattaataatatctgggaaaatgtatgaaatgagttcc |
2486695 |
T |
|
| Q |
507 |
tgataattatatagtttttaatgttttaaaatttcaaaataatgttcattttagatcatcttatgtagtataat |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2486696 |
tgataattatatagtttttaatgttttaaaatttcaaaataatgttcatttgagttcatcttatgtagtataat |
2486769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 26 - 467
Target Start/End: Original strand, 2470697 - 2471135
Alignment:
| Q |
26 |
cccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccattaccaccattaaaattccaaacattgtttgggataacgatattgc |
125 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||| | ||||||| |||||||||||| |||||||||||| | | |||| |
|
|
| T |
2470697 |
cccaagactcaccagcagactatgtgaacgcccacaatgcagcaagatttgtgattaccagtgctaaaattccaaatattgtttgggatgaaaaagttgc |
2470796 |
T |
|
| Q |
126 |
tgcatttgcgcagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtggtggccgttatggcgagaatattgccgtgagcaccggc |
225 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2470797 |
tgcttttgcacagaactatgctaataaacgcaaggattgtaaacagatcccttcaggcagtggtggccgttatggcgagaatattgcggtgagcaccggc |
2470896 |
T |
|
| Q |
226 |
tacgtaagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgatggtcatgaatgccaccatt |
325 |
Q |
| |
|
||| |||| | || ||||||||| | |||||||| || || ||| ||| | |||||||| |||||||||| ||| ||| |||||| | |||| |
|
|
| T |
2470897 |
tacaagagtgtcagagatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtgg---tgaatgtcttcatt |
2470993 |
T |
|
| Q |
326 |
atactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggcacatttgttacttgcaattatgatccccctgg |
425 |
Q |
| |
|
|||| |||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| || ||||| |
|
|
| T |
2470994 |
atacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctgg |
2471093 |
T |
|
| Q |
426 |
taacattgctggccaattaccatactaagtgattcatatcaa |
467 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| ||||| |
|
|
| T |
2471094 |
taacattgctggtcaattaccgtactaagtgactcagatcaa |
2471135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 28 - 446
Target Start/End: Original strand, 2478532 - 2478950
Alignment:
| Q |
28 |
caagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccattaccac---cattaaaattccaaacattgtttgggataacgatattg |
124 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||| || || | ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
2478532 |
caagactcaccagcagactacgtgaatgctcacaacaaagcaagatctgcagttgattcattcattaaaattccaaacattgtttgggacaacgaagttg |
2478631 |
T |
|
| Q |
125 |
ctgcatttgcgcagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtggtggccgttatggcgagaatattgccgtgagcaccgg |
224 |
Q |
| |
|
|||| | ||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||||||||| |||||||| || |
|
|
| T |
2478632 |
ctgcttatgcacagaactatgctaatcaacgcaaggattgtaaaccgataccctccaatggtggtggtcgttatggcaagaatattgcggtgagcactgg |
2478731 |
T |
|
| Q |
225 |
ctacgtaagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgatggtcatgaatgccaccat |
324 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||| ||||||| ||||| ||||| || ||||| |||| |||| |||||||| ||||| || ||| |
|
|
| T |
2478732 |
ctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactatcttaacaaatgttttgatggt---gaatgtcatcat |
2478828 |
T |
|
| Q |
325 |
tatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggcacatttgttacttgcaattatgatccccctg |
424 |
Q |
| |
|
| ||| ||||| |||||| | ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||||| | |
|
|
| T |
2478829 |
tttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcccccag |
2478928 |
T |
|
| Q |
425 |
gtaacattgctggccaattacc |
446 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
2478929 |
gtaacattcctggccaattacc |
2478950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 88 - 446
Target Start/End: Original strand, 2483099 - 2483454
Alignment:
| Q |
88 |
attaaaattccaaacattgtttgggataacgatattgctgcatttgcgcagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtg |
187 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||| | ||| |||||||||||||||||||||||||||||||||| ||||||||| | |||| |
|
|
| T |
2483099 |
attaaaattccaaaaattgtttgggataaaaaaattgctgcttatgcacagaactatgctaatcaacgcaaggattgtaaaccgatcccctctgatagtg |
2483198 |
T |
|
| Q |
188 |
gtggccgttatggcgagaatattgccgtgagcaccggctacgtaagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcacta |
287 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||| || | ||||| |||||||||||||||||| ||||||| ||||| ||||| || |||| |
|
|
| T |
2483199 |
gtggccgttacggtgagaatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataacta |
2483298 |
T |
|
| Q |
288 |
tgctaactcatgtattgatggtcatgaatgccaccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
387 |
Q |
| |
|
| |||| |||| ||||||| |||||| || |||| ||| ||||| |||||| | ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
2483299 |
tcttaacaaatgttttgatgg---tgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataat |
2483395 |
T |
|
| Q |
388 |
ggtggcacatttgttacttgcaattatgatccccctggtaacattgctggccaattacc |
446 |
Q |
| |
|
||||| |||||||||||||| |||||| ||||||| ||||| ||| ||||||||||||| |
|
|
| T |
2483396 |
ggtggaacatttgttacttgtaattattatcccccaggtaatattcctggccaattacc |
2483454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 2469663 - 2469921
Alignment:
| Q |
22 |
catgcccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccatt---accaccattaaaattccaaacattgtttgggataacg |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || || | | ||||||||||||| ||||||||||| ||| |
|
|
| T |
2469663 |
catgcccaagactcaccagcagactacgtgaacgcccacaataatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttgggacaaca |
2469762 |
T |
|
| Q |
119 |
atattgctgcatttgcgcagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtggtggccgttatggcgagaatattgccgtgag |
218 |
Q |
| |
|
| ||||||| ||||| | ||||||||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| || |||||||| || | ||| |
|
|
| T |
2469763 |
aagttgctgcttttgcaaaaaactatgctaatcaacgcaaggattgtcaactggtccactctggtggtggtggccgttacggagagaatatcgcggagag |
2469862 |
T |
|
| Q |
219 |
caccggctacgtaagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatact |
277 |
Q |
| |
|
||| ||| || | ||||||| ||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
2469863 |
cactggcaacatgagtggcgtagaagcggtgaagttgtgggtggatgaaaaaccctact |
2469921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 464
Target Start/End: Original strand, 2473940 - 2474379
Alignment:
| Q |
22 |
catgcccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccatt---accaccattaaaattccaaacattgtttgggataacg |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| |||||||||| || || || | |||||||||||||||||| ||||||| ||| |
|
|
| T |
2473940 |
catgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaagatcggcagttgatacaaatattaaaattccaaacattatttgggacaaca |
2474039 |
T |
|
| Q |
119 |
atattgctgcatttgcgcagaactatgctaatcaacgcaaggattgtaaacagatcccctcaggcagtggtggccgttatggcgagaatattgccgtgag |
218 |
Q |
| |
|
| ||||||| | ||| || || |||||||||||||||||||||||| || | ||| ||| || ||||| |||||| || || ||||| || | ||| |
|
|
| T |
2474040 |
aagttgctgcttatgcacaaaattatgctaatcaacgcaaggattgtcaattggtccactccgg---tggtgaccgttacggagaaaatatcgcagagag |
2474136 |
T |
|
| Q |
219 |
caccggctacgtaagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgatggtcatgaatgc |
318 |
Q |
| |
|
|| |||| | | ||||| |||||||||||||| | ||||||||| ||||| ||| || | | |||||||||| ||| |||| |||||| |
|
|
| T |
2474137 |
cagcggcgatatgagtggtatcgaagcagtgaagttatttgtggatgaaaaaccaaactacgattatagtagtaactcatgtgttggtggt---gaatgc |
2474233 |
T |
|
| Q |
319 |
caccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggcacatttgttacttgcaattatgatc |
418 |
Q |
| |
|
| |||||||||||||||||||||| ||| || |||| ||||||||| ||||||||||||||||||||| || ||||| ||||||||||||| || | |
|
|
| T |
2474234 |
ctccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacc |
2474333 |
T |
|
| Q |
419 |
cccctggtaacattgctggccaattaccatactaagtgattcatat |
464 |
Q |
| |
|
||||||| ||| | |||| || |||||||||| |||||||||| |
|
|
| T |
2474334 |
cccctggcaactatattggcgaaagaccatactaattgattcatat |
2474379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 3063405 - 3063339
Alignment:
| Q |
321 |
ccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
387 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
3063405 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
3063339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 2462592 - 2462658
Alignment:
| Q |
321 |
ccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
387 |
Q |
| |
|
||||||||| ||||| |||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
2462592 |
ccattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
2462658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 2466640 - 2466706
Alignment:
| Q |
321 |
ccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
387 |
Q |
| |
|
||||||||| ||||| |||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
2466640 |
ccattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
2466706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 2466353 - 2466405
Alignment:
| Q |
22 |
catgcccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatc |
74 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||| |||||||||| |
|
|
| T |
2466353 |
catgcccaagactcacaagcagactatgtgaacgctcacaacgaagcaagatc |
2466405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 2469972 - 2470108
Alignment:
| Q |
328 |
actcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggcacatttgttacttgcaattatgatccccctggta |
427 |
Q |
| |
|
||||||||||||||| ||| ||| ||| ||||||||| ||||||||||||| |||| || || ||||| ||||||||||||| || || || || | |
|
|
| T |
2469972 |
actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggca |
2470071 |
T |
|
| Q |
428 |
acattgctggccaattaccatactaagtgattcatat |
464 |
Q |
| |
|
|| | |||| || ||||||||||||||||||||| |
|
|
| T |
2470072 |
actatattggcgaaagaccatactaagtgattcatat |
2470108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 18015915 - 18015981
Alignment:
| Q |
321 |
ccattatactcaggtggtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
387 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
18015915 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
18015981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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