View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16978_high_5 (Length: 474)

Name: NF16978_high_5
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16978_high_5
NF16978_high_5
[»] chr3 (11 HSPs)
chr3 (1-468)||(1717455-1717922)
chr3 (256-468)||(1738952-1739164)
chr3 (292-468)||(1754123-1754300)
chr3 (343-468)||(1748807-1748932)
chr3 (95-176)||(46893416-46893497)
chr3 (95-149)||(13639459-13639513)
chr3 (24-176)||(54186928-54187080)
chr3 (95-176)||(29235677-29235758)
chr3 (95-163)||(48543213-48543281)
chr3 (95-164)||(20909363-20909432)
chr3 (95-127)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (94-176)||(30085447-30085529)
chr8 (95-176)||(33440574-33440655)
chr8 (95-176)||(28700583-28700664)
chr8 (95-173)||(6580862-6580939)
chr8 (97-147)||(31703822-31703872)
chr8 (112-176)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (94-179)||(51475233-51475318)
chr4 (95-163)||(31699549-31699617)
chr4 (95-159)||(37306476-37306540)
chr4 (94-171)||(6540258-6540335)
chr4 (95-149)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (95-162)||(709-776)
[»] chr5 (7 HSPs)
chr5 (95-179)||(41020248-41020332)
chr5 (95-157)||(42958487-42958549)
chr5 (95-163)||(5990589-5990657)
chr5 (95-163)||(18237206-18237274)
chr5 (95-163)||(30892150-30892218)
chr5 (95-163)||(32153763-32153831)
chr5 (78-150)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (95-150)||(932035-932090)
chr1 (103-176)||(11709656-11709729)
chr1 (95-176)||(19078941-19079022)
chr1 (95-176)||(19126829-19126910)
chr1 (97-163)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (94-176)||(17878710-17878792)
chr7 (95-163)||(557447-557515)
chr7 (94-150)||(47822035-47822091)
chr7 (95-176)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (97-163)||(5140042-5140108)
chr2 (103-179)||(864178-864254)
chr2 (95-163)||(6951739-6951808)
chr2 (81-174)||(16011989-16012082)
chr2 (95-163)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (95-176)||(7447636-7447716)
chr6 (96-176)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 1717922 - 1717455
Alignment:
Q  1 ttattcatatattcctgaaacagaatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcac 100  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||| ||       |||| | || |||||||||||||||||| ||||  |||||||    
T  1717922 ttattcatatattcctcaggcagaatgttaagaacactctcttactaatactttttctaacactcactctcgtattagatgaaatctatatggatctcac 1717823  T
Q  101 cactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgtacatggcattcctccttagac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| ||||| ||||||||||    
T  1717822 cactttatgtatgatccatttccaatatttgatatccacatgaatttcactaaataagaaagtggacgttagagaatgtacatagcatttctccttagac 1717723  T
Q  201 agaatgctaggaacactcttactagaactttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagctgatttct 300  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  1717722 agaatgctaggaacactcttactggcactttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaactgatttct 1717623  T
Q  301 ttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  1717622 ttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagcttg 1717523  T
Q  401 aagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1717522 aagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtc 1717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 256 - 468
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
Q  256 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 355  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  356 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 455  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  456 atgtgatgatgtc 468  Q
    ||||||| |||||    
T  1738964 atgtgatcatgtc 1738952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 292 - 468
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
Q  292 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 390  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  391 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 468  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc 1754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 343 - 468
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
Q  343 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 442  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  443 atcccaaatacttatgtgatgatgtc 468  Q
    | |||| |  |||||||||| |||||    
T  1748832 aacccagaggcttatgtgatcatgtc 1748807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 149  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 54186928 - 54187080
Alignment:
Q  24 aatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttcc 123  Q
    |||| ||||||||||||||| |||||||       |||||| || ||| |||| | |||||  ||| | |||||||||| |||||||| ||||||||||     
T  54186928 aatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttct 54187027  T
Q  124 aatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54187028 aatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 164  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaata 127  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  94 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 173  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  97 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 147  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  112 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  94 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 179  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 159  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  94 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 171  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 149  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 162  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 179  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 157  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 34320913 - 34320985
Alignment:
Q  78 gatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 150  Q
    |||||||||||| | | ||||||||||||||||| |||| |||| |||  | || |||||||||| |||||||    
T  34320913 gatgaaatccatgtgagtctcaccactttatgtgggatctattttcaaagtatggtatccacatggatttcac 34320985  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 150  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  103 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  97 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  94 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  94 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 150  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  97 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  103 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 179  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 163  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  81 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 174  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 163  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  95 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  96 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 176  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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