View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16978_low_1 (Length: 953)

Name: NF16978_low_1
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16978_low_1
NF16978_low_1
[»] chr4 (54 HSPs)
chr4 (14-861)||(50668544-50669392)
chr4 (94-495)||(50250602-50251006)
chr4 (307-495)||(37827022-37827210)
chr4 (232-546)||(7877534-7877847)
chr4 (225-483)||(48852534-48852792)
chr4 (225-351)||(7908325-7908445)
chr4 (391-546)||(7773938-7774093)
chr4 (393-495)||(48870401-48870503)
chr4 (393-495)||(48886087-48886189)
chr4 (677-746)||(7822585-7822654)
chr4 (682-746)||(7813096-7813160)
chr4 (654-770)||(45372427-45372543)
chr4 (654-770)||(48156797-48156913)
chr4 (391-495)||(48875705-48875809)
chr4 (382-746)||(7771020-7771379)
chr4 (688-746)||(7800253-7800311)
chr4 (382-783)||(7789668-7790064)
chr4 (625-781)||(48870123-48870279)
chr4 (625-781)||(48885809-48885965)
chr4 (647-743)||(49041501-49041597)
chr4 (389-488)||(48170690-48170789)
chr4 (682-748)||(45366619-45366685)
chr4 (289-359)||(48170581-48170651)
chr4 (647-729)||(48891042-48891124)
chr4 (677-783)||(50251201-50251307)
chr4 (319-364)||(7813464-7813509)
chr4 (319-364)||(7822953-7822998)
chr4 (314-353)||(7237767-7237806)
chr4 (314-353)||(7771396-7771435)
chr4 (314-353)||(7790081-7790120)
chr4 (68-158)||(45371873-45371963)
chr4 (647-729)||(47207567-47207649)
chr4 (682-791)||(7238118-7238227)
chr4 (677-770)||(7904624-7904717)
chr4 (297-354)||(48147744-48147801)
chr4 (292-353)||(48705381-48705442)
chr4 (649-722)||(48875486-48875559)
chr4 (68-109)||(48898955-48898996)
chr4 (382-450)||(7237823-7237891)
chr4 (649-729)||(7877353-7877433)
chr4 (382-546)||(7908142-7908306)
chr4 (682-770)||(48862833-48862921)
chr4 (298-353)||(7773845-7773900)
chr4 (647-746)||(7907941-7908040)
chr4 (678-725)||(45385181-45385228)
chr4 (688-803)||(48902509-48902624)
chr4 (393-440)||(49044310-49044357)
chr4 (225-267)||(48705332-48705374)
chr4 (868-941)||(49048505-49048579)
chr4 (667-721)||(50672161-50672215)
chr4 (323-356)||(7800629-7800662)
chr4 (395-440)||(33133930-33133975)
chr4 (68-105)||(37826801-37826838)
chr4 (681-746)||(48735712-48735777)
[»] chr7 (2 HSPs)
chr7 (296-495)||(48883657-48883856)
chr7 (68-172)||(48883981-48884086)
[»] chr6 (5 HSPs)
chr6 (74-359)||(21979442-21979727)
chr6 (652-723)||(21980012-21980083)
chr6 (394-488)||(21015672-21015766)
chr6 (868-934)||(21979564-21979631)
chr6 (382-497)||(21979753-21979868)
[»] chr8 (10 HSPs)
chr8 (301-495)||(12200163-12200357)
chr8 (301-495)||(12444591-12444785)
chr8 (619-746)||(15348478-15348605)
chr8 (289-351)||(12195300-12195362)
chr8 (289-351)||(12439728-12439790)
chr8 (390-495)||(12195156-12195261)
chr8 (390-495)||(12439584-12439689)
chr8 (694-729)||(4032326-4032361)
chr8 (677-770)||(12199899-12199992)
chr8 (677-770)||(12444327-12444420)
[»] chr3 (8 HSPs)
chr3 (390-537)||(47452018-47452165)
chr3 (295-358)||(11005978-11006041)
chr3 (295-358)||(11024553-11024616)
chr3 (677-783)||(11006355-11006461)
chr3 (648-770)||(11024901-11025023)
chr3 (421-545)||(11024673-11024797)
chr3 (404-514)||(11015644-11015754)
chr3 (677-770)||(47452300-47452393)
[»] chr5 (6 HSPs)
chr5 (404-499)||(29696067-29696162)
chr5 (685-770)||(29687643-29687728)
chr5 (647-766)||(1812021-1812140)
chr5 (682-729)||(42562729-42562776)
chr5 (296-354)||(29696203-29696261)
chr5 (886-934)||(179113-179162)
[»] chr1 (4 HSPs)
chr1 (295-354)||(24310168-24310227)
chr1 (404-490)||(24310047-24310133)
chr1 (682-748)||(24322076-24322142)
chr1 (295-354)||(24367144-24367203)


Alignment Details
Target: chr4 (Bit Score: 793; Significance: 0; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 14 - 861
Target Start/End: Complemental strand, 50669392 - 50668544
Alignment:
Q  14 cacaaaccacaatctgaagtttgatggataaaatcatccggaagagtaggcatgtctaacagtttcctttccatcaaatcaaaggcaacaatgacaaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669392 cacaaaccacaatctgaagtttgatggataaaatcatccggaagagtaggcatgtctaacagtttcctttccatcaaatcaaaggcaacaatgacaaaca 50669293  T
Q  114 cctttaaatcataacgaaaagtcaaccaataaataacctcattaaagagaacccctattttccgatgatcattagtggaaatcatataagcgaagtgagt 213  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50669292 cctttaaatcataacgaaaagccaaccaataaatagcctcattaaagagaacccctattttccgatgatcattagtagaaatcatataagcgaagtgagt 50669193  T
Q  214 atcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaaca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669192 atcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaaca 50669093  T
Q  314 accaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatttgtt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50669092 accaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatctgtt 50668993  T
Q  414 tatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataaga 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668992 tatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataaga 50668893  T
Q  514 tcgaggaagtgaaaaattaaggttgagtgaagcccaatgattgtt-agcgatgatgactcaaaatctatagatcgaaactcaagaggtgaatgtgatgat 612  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668892 ttgaggaagtgaaaaattaaggttgagtgaagcccaatgattgttaagcgatgatgactcaaaatctatagatcgaaactcaagaggtgaatgtgatgat 50668793  T
Q  613 atggataaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgc 712  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668792 atggataaaattctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgc 50668693  T
Q  713 acttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagatacgacagtgttgtcttctccatctccatctc 812  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||  |||||||| ||||||||||    
T  50668692 acttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatgcagatactacattgtcatcttctccgtctccatctc 50668593  T
Q  813 tgagacaatgacgtatggaaaaggggataatagaaaatggtcacaccga 861  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668592 tgagacaatgacgtatggaaaaggggataatagaaaatggtcacaccga 50668544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 94 - 495
Target Start/End: Original strand, 50250602 - 50251006
Alignment:
Q  94 aaaggcaacaatgacaaacacctttaaatcataacgaaaagtcaaccaataaataacctcattaaagagaacccctattttcc---gatgatcattagtg 190  Q
    |||||||||||| ||| | |||  ||||||||||||||||| |||||||| |||| || |||||||||||||||||   || |   || ||||   ||||    
T  50250602 aaaggcaacaataacatagaccaataaatcataacgaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtg 50250701  T
Q  191 gaaatcatataagcgaagtgagtatcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatgg 290  Q
    ||| |||||||||| ||||| ||| |||| ||  |||||||||||||  |||||| ||||| ||| |||||||| |||| || ||||  || ||  ||      
T  50250702 gaattcatataagctaagtgtgtaccctcaatttcaatttgtttccagatattatttctcaatgaaaaaaactccaaatgtgatgaatcattata-atca 50250800  T
Q  291 tt-ggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtat 389  Q
    |  |||| |||||| | |||||| ||||| ||||||||| ||||  |||||||||||||||||||||||||||   ||||||||| ||||| ||||| ||    
T  50250801 taaggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaat 50250900  T
Q  390 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 489  Q
    ||||| ||||||| ||||||||| | ||||  | ||||||||||||||||| | ||| | | ||| |||| || ||||||||||| |||||||| |||||    
T  50250901 caaaatgagacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacc 50251000  T
Q  490 tctaat 495  Q
    | ||||    
T  50251001 tttaat 50251006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 307 - 495
Target Start/End: Original strand, 37827022 - 37827210
Alignment:
Q  307 tgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggt 406  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||  | | |||| |||||| |  |  ||||  | |||||||||||| |||    
T  37827022 tgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagacaagggt 37827121  T
Q  407 atttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 495  Q
    |||||||| |||||||  |||||||||||||||||| |||||||  ||||||  |||||||||| ||| |||||||  |||||| ||||    
T  37827122 atttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaat 37827210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 232 - 546
Target Start/End: Complemental strand, 7877847 - 7877534
Alignment:
Q  232 tttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatcatctctt 331  Q
    |||||||||||||||||| | |||||||||||  |||| || ||||| || | | |||||||||| ||||||||||||||| ||||||||||||||||||    
T  7877847 tttccatgtattatctctaaatgagaaaaacttcaaatgtgttgaaa-attaactatggttggattataggacaatgaaaccaccaagtaatcatctctt 7877749  T
Q  332 gaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatg 431  Q
    ||  |||||||||||||||||| || || |     |  |||| |   || ||||| |  |||||||||||  ||||||||||| | |||||  |||||||    
T  7877748 gattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaaaaggagacacaggtatttgttttttaaatccagtggatg 7877649  T
Q  432 gattccatatgcagatg-ttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaat 530  Q
    ||||||||||| ||||| ||||| | ||| | ||||| |||||| ||||| || ||||||||||| |||   | |||||||| || | ||||||||||||    
T  7877648 gattccatatgtagatgattggatg-acagtacaaaagtataaaccctctgcatgaacctctaatttcaaccggaaaataaggtccacgaagtgaaaaat 7877550  T
Q  531 taaggttgagtgaagc 546  Q
    ||| ||| ||||||||    
T  7877549 taatgttcagtgaagc 7877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 225 - 483
Target Start/End: Complemental strand, 48852792 - 48852534
Alignment:
Q  225 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 324  Q
    |||||| |||||||| |||| |||||| |||||||||||| |||| || ||||| || | | | ||||| ||||||||||| | |||| |||||||||||    
T  48852792 caatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggacattaaaactaccaagtaatc 48852693  T
Q  325 atctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcc-tttagtttggtatcaaaaggagacaatggtatttgtttatgaaatct 423  Q
    |||  ||||| ||||||| |||||||||||||||| | || ||  || | || | ||   | | |||||  |||||||| ||||||||||| |||| ||     
T  48852692 atcggttgacgggtcatacccaaaaccatatagat-aacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaactcc 48852594  T
Q  424 ggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctaca 483  Q
    |||||||||||||||||   | || |  |||||||  |||||||||||||||||||||||    
T  48852593 ggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctaca 48852534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 225 - 351
Target Start/End: Complemental strand, 7908445 - 7908325
Alignment:
Q  225 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 324  Q
    |||||| |||||||||||||||||| |||||||||||||  |||| || |||||    || |  || ||||| ||||||||||||||| |||||||||||    
T  7908445 caatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa----atgc--ggatggattataggacaatgaaaccaccaagtaatc 7908352  T
Q  325 atctcttgaccggtcataaccaaaacc 351  Q
    |||||||||| ||||||||||||||||    
T  7908351 atctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 391 - 546
Target Start/End: Original strand, 7773938 - 7774093
Alignment:
Q  391 aaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 490  Q
    ||||||||||   ||||||||||| | |||||  |||||||||||||||||| ||||||| |    || || ||||| |||||| |||||||||||||||    
T  7773938 aaaaggagacccaggtatttgttttttaaatccagtggatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacct 7774037  T
Q  491 ctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagc 546  Q
    ||||| ||||  | ||||||||||   ||||| |||||||||||||| | ||||||    
T  7774038 ctaatttcagccggaaaataagattctggaagcgaaaaattaaggttcactgaagc 7774093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 495
Target Start/End: Complemental strand, 48870503 - 48870401
Alignment:
Q  393 aaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctct 492  Q
    ||||| |||| ||||||||||| ||||||| ||||||||||||||||| | ||| | | | || ||||||||| ||||||||||||||||| |||||| |    
T  48870503 aaggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48870404  T
Q  493 aat 495  Q
    |||    
T  48870403 aat 48870401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 495
Target Start/End: Complemental strand, 48886189 - 48886087
Alignment:
Q  393 aaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctct 492  Q
    ||||| |||| ||||||||||| ||||||| ||||||||||||||||| | ||| | | | || ||||||||| ||||||||||||||||| |||||| |    
T  48886189 aaggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48886090  T
Q  493 aat 495  Q
    |||    
T  48886089 aat 48886087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 677 - 746
Target Start/End: Complemental strand, 7822654 - 7822585
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  7822654 gatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 682 - 746
Target Start/End: Complemental strand, 7813160 - 7813096
Alignment:
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  7813160 gagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7813096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 654 - 770
Target Start/End: Original strand, 45372427 - 45372543
Alignment:
Q  654 aaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaa 753  Q
    |||||| ||||| |||||||   |||| ||||| | |||||||||||| |||||||| || ||||||||||||||| | ||||| ||||||||||  | |    
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtaga 45372526  T
Q  754 atttgaatgatcaattc 770  Q
    |||||||| ||||||||    
T  45372527 atttgaatcatcaattc 45372543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 654 - 770
Target Start/End: Original strand, 48156797 - 48156913
Alignment:
Q  654 aaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaa 753  Q
    |||||||||||| |||||||    ||||||||| |||||||||||||| |||||||||||||||||||||| |||| | ||||| || |||| ||  |      
T  48156797 aaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaagg 48156896  T
Q  754 atttgaatgatcaattc 770  Q
    |||||||| ||||||||    
T  48156897 atttgaattatcaattc 48156913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 391 - 495
Target Start/End: Complemental strand, 48875809 - 48875705
Alignment:
Q  391 aaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 490  Q
    |||||||||||  ||||||||||| ||||||| ||||||||||||||||| | ||| | | ||| |||||||||| | |||||||||||| || ||||||    
T  48875809 aaaaggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacct 48875710  T
Q  491 ctaat 495  Q
     ||||    
T  48875709 ttaat 48875705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 382 - 746
Target Start/End: Complemental strand, 7771379 - 7771020
Alignment:
Q  382 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 481  Q
    ||||| |||||| |||||||  ||||||||| | | |||||   ||||||||||||||| |  |||||| | ||  |  | ||||| |||||| ||||||    
T  7771379 tttggaatcaaagggagacaccggtatttgtgttttaaatccaatggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctcta 7771280  T
Q  482 cacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagcccaatgattgttagcgatgatgactcaaaatctat 581  Q
    |||||||||||||| |||  || ||||||||||   ||||| |||||||||||||| | ||||||   || || ||||   |  |||  |||||||||||    
T  7771279 cacgaacctctaatttcaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatcgttaagaa--atgcttcaaaatctat 7771182  T
Q  582 agatcgaaactcaagaggtgaatgtgatgatatggataaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcg 681  Q
    ||||||||  ||| ||| |   || | ||||||| |||||| ||||| |||||||| | | |    ||||| |||||| |||||  |||| |   ||||     
T  7771181 agatcgaatttcatgagat---tgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatca 7771085  T
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    ||||| |||||||||||||| ||||||||||| ||||||| ||||||| | ||||| ||||||||    
T  7771084 gagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacct 7771020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 688 - 746
Target Start/End: Complemental strand, 7800311 - 7800253
Alignment:
Q  688 agagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  7800311 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 382 - 783
Target Start/End: Complemental strand, 7790064 - 7789668
Alignment:
Q  382 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 481  Q
    ||||| |||||| |||||||  ||||||||| | | |||||  |||||||||||||||| |  |||||| | ||  |  | ||||| |||||| ||||||    
T  7790064 tttggaatcaaagggagacaccggtatttgtgttttaaatccagtggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctcta 7789965  T
Q  482 cacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagcccaatgattgttagcgatgatgactcaaaatctat 581  Q
    |||||||||||||| | |  || ||||||||||   ||||| |||||||||||||| | ||||||   || || ||||   |  |||  |||||||||||    
T  7789964 cacgaacctctaatttaaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatcgttaagaa--atgcttcaaaatctat 7789867  T
Q  582 agatcgaaactcaagaggtgaatgtgatgatatggataaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcg 681  Q
    ||||| ||  ||| ||| |   || | ||||||  |||||| ||||| |||||||| | |||    ||||| |||||| |||||  |||| |   |||||    
T  7789866 agatcaaatttcatgagat---tgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcg 7789770  T
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 781  Q
    ||||| | |||||||||||| ||||||||||| ||||||| ||||||| | ||||| |||||||| | || |||||| || |||| ||| | | ||||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 7789670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 625 - 781
Target Start/End: Complemental strand, 48870279 - 48870123
Alignment:
Q  625 ctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgta 724  Q
    ||||||||||||| | ||||  | || | |||||| ||||| ||||||  | |||||||||| ||| |||||||||| ||||||||||| |||||||| |    
T  48870279 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48870180  T
Q  725 taagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 781  Q
    ||||| | ||||| || | ||| | || ||||||||  |||||||| | ||||||||    
T  48870179 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 48870123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 625 - 781
Target Start/End: Complemental strand, 48885965 - 48885809
Alignment:
Q  625 ctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgta 724  Q
    ||||||||||||| | ||||  | || | |||||| ||||| ||||||  | |||||||||| ||| |||||||||| ||||||||||| |||||||| |    
T  48885965 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48885866  T
Q  725 taagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 781  Q
    ||||| | ||||| || | ||| | || ||||||||  |||||||| | ||||||||    
T  48885865 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 48885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 647 - 743
Target Start/End: Original strand, 49041501 - 49041597
Alignment:
Q  647 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaa 743  Q
    |||||| |||||||||||| ||||||| | |||| ||||| |||||||||||||| || |||||||| |||||||  |||||| | ||||| |||||    
T  49041501 taagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaa 49041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 48170690 - 48170789
Alignment:
Q  389 tcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaac 488  Q
    |||| ||||||||| |||||||||||||||| || ||||||||||||||||| | |||   | |||  |  |||||||||||||||||||||||| ||||    
T  48170690 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 48170789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 748
Target Start/End: Original strand, 45366619 - 45366685
Alignment:
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctta 748  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||| | ||||| || |||||||    
T  45366619 gagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacctta 45366685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 48170581 - 48170651
Alignment:
Q  289 ggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 359  Q
    |||||||||| |||||| |||||| || ||||||||||||||| || | ||||| ||||||||||||||||    
T  48170581 ggttggatcacaggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaaccatatagat 48170651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 647 - 729
Target Start/End: Complemental strand, 48891124 - 48891042
Alignment:
Q  647 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 729  Q
    |||||| |||||| ||||| |||||||   |||| ||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  48891124 taagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataaga 48891042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 677 - 783
Target Start/End: Original strand, 50251201 - 50251307
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatg 776  Q
    |||| ||||| |||||||||||||| ||| |||| ||||| ||  ||||||||   ||||| |||||||| || ||||||||| |||||||||||| | |    
T  50251201 gatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgagg 50251300  T
Q  777 cagatac 783  Q
    |||||||    
T  50251301 cagatac 50251307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 7813509 - 7813464
Alignment:
Q  319 gtaatcatctcttgaccggtcataaccaaaaccatatagatgatca 364  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  7813509 gtaatcatctcttgactggtcataaccaaaaccatatagattatca 7813464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 7822998 - 7822953
Alignment:
Q  319 gtaatcatctcttgaccggtcataaccaaaaccatatagatgatca 364  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  7822998 gtaatcatctcttgactggtcataaccaaaaccatatagattatca 7822953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 7237767 - 7237806
Alignment:
Q  314 accaagtaatcatctcttgaccggtcataaccaaaaccat 353  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  7237767 accaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 7771435 - 7771396
Alignment:
Q  314 accaagtaatcatctcttgaccggtcataaccaaaaccat 353  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  7771435 accaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 7790120 - 7790081
Alignment:
Q  314 accaagtaatcatctcttgaccggtcataaccaaaaccat 353  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  7790120 accaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 45371873 - 45371963
Alignment:
Q  68 tctaacagtttcctttccatcaaatcaaaggcaacaatgacaaacacctttaaatcataacgaaaagtcaaccaataaataacctcattaa 158  Q
    ||||| ||||||| |||||| ||||||||||||| ||| |||  || |  |||||||| |||||||| ||||||||||||| || ||||||    
T  45371873 tctaaaagtttccgttccattaaatcaaaggcaagaataacactcatcgataaatcatgacgaaaagacaaccaataaatagccccattaa 45371963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 647 - 729
Target Start/End: Complemental strand, 47207649 - 47207567
Alignment:
Q  647 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 729  Q
    ||||||||||||| ||||||| |||||   | ||||||||||||||||| ||||| || ||||| | ||| ||||||||||||    
T  47207649 taagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgtataaga 47207567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 791
Target Start/End: Original strand, 7238118 - 7238227
Alignment:
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 781  Q
    ||||| |||||||||||||| |||||||| || |||||||  |||||| | ||||| |||||||| | || |||||| ||||| | ||| | | ||||||    
T  7238118 gagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcagat 7238217  T
Q  782 acgacagtgt 791  Q
    || |||||||    
T  7238218 acaacagtgt 7238227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 677 - 770
Target Start/End: Complemental strand, 7904717 - 7904624
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 770  Q
    |||| ||||| |||||||||||  | |||||||| || ||||||||||||||| | ||||| |||||||  | ||| |||||||| ||||||||    
T  7904717 gatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattc 7904624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 48147744 - 48147801
Alignment:
Q  297 cataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 354  Q
    ||||||| |||||||| ||||||||||||||| || || ||||||| |||||||||||    
T  48147744 cataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 48705381 - 48705442
Alignment:
Q  292 tggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccat 353  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| | ||||| ||||||||||    
T  48705381 tggatcaacggacattgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 722
Target Start/End: Complemental strand, 48875559 - 48875486
Alignment:
Q  649 agttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacg 722  Q
    |||| |||||| ||||| | ||||| | | ||||||||||||||||||||||| || |||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacg 48875486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 48898996 - 48898955
Alignment:
Q  68 tctaacagtttcctttccatcaaatcaaaggcaacaatgaca 109  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  48898996 tctaacagtttcctttccgttaaatcaaaggcaacaatgaca 48898955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 7237823 - 7237891
Alignment:
Q  382 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgtt 450  Q
    ||||| ||||||||||||||  ||||||||||| | |||||  |||||||||||||||| | |||||||    
T  7237823 tttggaatcaaaaggagacacgggtatttgttttttaaatccagtggatggattccatacgtagatgtt 7237891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 649 - 729
Target Start/End: Complemental strand, 7877433 - 7877353
Alignment:
Q  649 agttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 729  Q
    |||| |||||| ||||| ||||||||| |||| ||||| |||||||||||    ||||||| ||| |||||||||||||||    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataaga 7877353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 382 - 546
Target Start/End: Complemental strand, 7908306 - 7908142
Alignment:
Q  382 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 481  Q
    ||||| ||||| ||||||||   |||| ||||| | |||||  || ||||||||||||||| ||||||  | || ||  | ||||| |||||| ||||||    
T  7908306 tttggaatcaacaggagacaggtgtatatgttttttaaatccagtagatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctcta 7908207  T
Q  482 cacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagc 546  Q
    || ||||||||||| |||   | ||||| |||||| | ||| |||||| ||| ||||||||||||    
T  7908206 catgaacctctaatttcaaccggaaaatgagatcgggtaagcgaaaaagtaatgttgagtgaagc 7908142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 682 - 770
Target Start/End: Complemental strand, 48862921 - 48862833
Alignment:
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 770  Q
    ||||| |||||||||||||| || |||||||| |||||||| |||||| | ||||| || ||||||| ||  ||| | |||||||||||    
T  48862921 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattc 48862833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 7773845 - 7773900
Alignment:
Q  298 ataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccat 353  Q
    ||||||||||  ||| ||||||||||||||||||  | ||||||||||||||||||    
T  7773845 ataggacaatacaaccaccaagtaatcatctcttacctggtcataaccaaaaccat 7773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 746
Target Start/End: Complemental strand, 7908040 - 7907941
Alignment:
Q  647 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    |||||| |||||| ||||| ||||||| | || | ||||| ||||||||||| || |||| |||  ||||||||||| ||||| | ||||| ||||||||    
T  7908040 taagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacct 7907941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Original strand, 45385181 - 45385228
Alignment:
Q  678 atcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtat 725  Q
    |||||||| ||||||||||||||| ||||||||| | |||||||||||    
T  45385181 atcggagacgagagaaaaccaagacttacaaacggatttgaaacgtat 45385228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 803
Target Start/End: Complemental strand, 48902624 - 48902509
Alignment:
Q  688 agagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagatacgaca 787  Q
    |||||||||||||| |||||||| || |||||||| || ||| | || || |||||||    ||||||||| ||||||||||| | | | ||||||| ||    
T  48902624 agagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtagatacggca 48902525  T
Q  788 gtgttgtcttctccat 803  Q
    ||||  ||||||||||    
T  48902524 gtgtcttcttctccat 48902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 49044310 - 49044357
Alignment:
Q  393 aaggagacaatggtatttgtttatgaaatctggtggatggattccata 440  Q
    |||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  49044310 aaggagacaaaggtatttgtttgtgaactctagtggatggattccata 49044357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 48705332 - 48705374
Alignment:
Q  225 caatttgtttccatgtattatctctcactgagaaaaactcaaa 267  Q
    |||||| ||||||||||||| |||||| |||||||||||||||    
T  48705332 caatttctttccatgtattaactctcaatgagaaaaactcaaa 48705374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 941
Target Start/End: Original strand, 49048505 - 49048579
Alignment:
Q  868 catataagggaagccagcaccctcaatttgtttccatgt-ttatctctgaatgagaaaaactccaaatatgatga 941  Q
    ||||||||||| |  || ||||||||||| ||||||| | |||||||| || |||||||||||||||| ||||||    
T  49048505 catataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatga 49048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 667 - 721
Target Start/End: Complemental strand, 50672215 - 50672161
Alignment:
Q  667 gcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaac 721  Q
    |||||||||||||| ||||||||||||| ||| || ||| |||| ||||||||||    
T  50672215 gcaaaattgtgatcagagatgagagaaagccatgacttagaaacacacttgaaac 50672161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 7800662 - 7800629
Alignment:
Q  323 tcatctcttgaccggtcataaccaaaaccatata 356  Q
    |||||||||||| |||||||||||||||||||||    
T  7800662 tcatctcttgactggtcataaccaaaaccatata 7800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 33133930 - 33133975
Alignment:
Q  395 ggagacaatggtatttgtttatgaaatctggtggatggattccata 440  Q
    |||||||| |||||||||||||||| || |||| ||||||||||||    
T  33133930 ggagacaaaggtatttgtttatgaactcgggtgaatggattccata 33133975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 37826801 - 37826838
Alignment:
Q  68 tctaacagtttcctttccatcaaatcaaaggcaacaat 105  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  37826801 tctaacagtttcctttccattaaattaaaggcaacaat 37826838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 746
Target Start/End: Original strand, 48735712 - 48735777
Alignment:
Q  681 ggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    |||||| |||||||||||||| |||||||| || |||||||| |||||| | ||||| || |||||    
T  48735712 ggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacct 48735777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 296 - 495
Target Start/End: Complemental strand, 48883856 - 48883657
Alignment:
Q  296 tcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaag 395  Q
    |||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||| || | | | |    ||| || |||||    
T  48883856 tcataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgtacttctgaaatggaataaaaag 48883757  T
Q  396 gagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 495  Q
    ||||||| ||||||||||| |||||||  ||| |||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| ||||    
T  48883756 gagacaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgttggaagaaccatgcaaaaacagaaaccctctacacgaacctttaat 48883657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 48884086 - 48883981
Alignment:
Q  68 tctaacagtttcctttccatcaaatcaaaggcaacaatgacaaacacctttaaatcataacg-aaaagtcaaccaataaataacctcattaaagagaacc 166  Q
    |||||||||||| ||||||| |||||||||||| |||| | |  |||  ||||||||||||| ||||  |||||||| |||| || |||||||| ||| |    
T  48884086 tctaacagtttcttttccattaaatcaaaggcagcaataatatccacacttaaatcataacgaaaaaaccaaccaatgaatagccccattaaagggaaac 48883987  T
Q  167 cctatt 172  Q
    ||||||    
T  48883986 cctatt 48883981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 74 - 359
Target Start/End: Original strand, 21979442 - 21979727
Alignment:
Q  74 agtttcctttccatcaaatcaaaggcaacaatgacaaacacctttaaatcataacgaaaagtcaaccaataaataacctcattaaagagaacccctattt 173  Q
    ||||||||||| || ||||||||||||||||| ||||||||   ||||||||| |||||||||||||||| |||| ||  |||||||| |||||||  ||    
T  21979442 agtttcctttctattaaatcaaaggcaacaataacaaacacagataaatcataccgaaaagtcaaccaatgaatagccctattaaagaaaaccccttgtt 21979541  T
Q  174 tccgatgatcattagtggaaatcatataagcgaagtgagtatcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttgg 273  Q
    |   |||||||||| ||| | ||||||||| ||| |||| | |||      ||||||||||||| |||||||||||||  ||||||| ||| |||| |||    
T  21979542 tggaatgatcattattgggattcatataagggaaatgagcaccct------caatttgtttccaggtattatctctcaaagagaaaacctccaaatgtgg 21979635  T
Q  274 tgaaa------tatcatccatggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 359  Q
    | |||      |||     ||| |||| ||||||  || |  ||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21979636 taaaacgacattattggatatgattgggtcatagcccattagaaccaccaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 723
Target Start/End: Original strand, 21980012 - 21980083
Alignment:
Q  652 tcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgt 723  Q
    |||||||| ||||| ||||| ||| |||  |||||||||||||||||||| |||||||| ||||||||||||    
T  21980012 tcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 21015766 - 21015672
Alignment:
Q  394 aggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaac 488  Q
    ||||||||| ||||||||||| |||| ||| |||||||||||||||| | ||||||| |||  |   |||||||||||||| |||||||| ||||    
T  21015766 aggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 934
Target Start/End: Original strand, 21979564 - 21979631
Alignment:
Q  868 catataagggaagccagcaccctcaatttgtttccatgt-ttatctctgaatgagaaaaactccaaat 934  Q
    ||||||||||||   ||||||||||||||||||||| || |||||||| || ||||||| ||||||||    
T  21979564 catataagggaaatgagcaccctcaatttgtttccaggtattatctctcaaagagaaaacctccaaat 21979631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 497
Target Start/End: Original strand, 21979753 - 21979868
Alignment:
Q  382 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 481  Q
    ||||| ||||| ||||||||| ||||||||||| |||| ||  || || || ||||||||| |||   | ||| |||| || ||||||||||| ||||||    
T  21979753 tttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctcta 21979852  T
Q  482 cacgaacctctaatat 497  Q
    || |||||| ||||||    
T  21979853 catgaacctttaatat 21979868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 301 - 495
Target Start/End: Complemental strand, 12200357 - 12200163
Alignment:
Q  301 ggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagac 400  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||| | | ||  ||   |||||||||||||    
T  12200357 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagac 12200258  T
Q  401 aatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 495  Q
    || ||||||| ||| ||||| || | |||||||||||||| | |||| || |   |||| ||||| |||||||| ||||| || |||||| ||||    
T  12200257 aaaggtatttttttgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaat 12200163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 301 - 495
Target Start/End: Complemental strand, 12444785 - 12444591
Alignment:
Q  301 ggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagac 400  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||| | | ||  ||   |||||||||||||    
T  12444785 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagac 12444686  T
Q  401 aatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 495  Q
    || ||||||| ||| ||||| || | |||||||||||||| | |||| || |   |||| ||||| |||||||| ||||| || |||||| ||||    
T  12444685 aaaggtatttttttgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaat 12444591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 619 - 746
Target Start/End: Complemental strand, 15348605 - 15348478
Alignment:
Q  619 aaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 718  Q
    ||||||||||||||||||| | ||||  ||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  15348605 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 15348506  T
Q  719 aacgtataagatatttcacgggcaacct 746  Q
    ||||||||||| | ||||| || |||||    
T  15348505 aacgtataagagacttcaccggtaacct 15348478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 12195362 - 12195300
Alignment:
Q  289 ggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaacc 351  Q
    ||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||||||    
T  12195362 ggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgtcataaccaaaacc 12195300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 12439790 - 12439728
Alignment:
Q  289 ggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaacc 351  Q
    ||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||||||    
T  12439790 ggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgtcataaccaaaacc 12439728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 495
Target Start/End: Complemental strand, 12195261 - 12195156
Alignment:
Q  390 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 489  Q
    ||||||||||||||  ||||| ||| |||||||| | |||||||||||||| | ||| ||| |   |||||| ||| |||||||| ||||| ||||||||    
T  12195261 caaaaggagacaattttatttctttgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacc 12195162  T
Q  490 tctaat 495  Q
    | ||||    
T  12195161 tttaat 12195156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 495
Target Start/End: Complemental strand, 12439689 - 12439584
Alignment:
Q  390 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 489  Q
    ||||||||||||||  ||||| ||| |||||||| | |||||||||||||| | ||| ||| |   |||||| ||| |||||||| ||||| ||||||||    
T  12439689 caaaaggagacaattttatttctttgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacc 12439590  T
Q  490 tctaat 495  Q
    | ||||    
T  12439589 tttaat 12439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 729
Target Start/End: Original strand, 4032326 - 4032361
Alignment:
Q  694 aaccaagatttacaaacgcacttgaaacgtataaga 729  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4032326 aaccaagatttacaaacacacttgaaacgtataaga 4032361  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 770
Target Start/End: Complemental strand, 12199992 - 12199899
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 770  Q
    |||| ||||| ||||||||||| || |||||||| || ||||||| || |||| | ||||| |||||||| | ||  ||||||||||| |||||    
T  12199992 gatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattc 12199899  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 770
Target Start/End: Complemental strand, 12444420 - 12444327
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 770  Q
    |||| ||||| ||||||||||| || |||||||| || ||||||| || |||| | ||||| |||||||| | ||  ||||||||||| |||||    
T  12444420 gatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattc 12444327  T

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Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 390 - 537
Target Start/End: Original strand, 47452018 - 47452165
Alignment:
Q  390 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 489  Q
    ||||||||| ||| ||||||||||| |||| ||  |||||||||||||||||| ||||||| |||||||||   |||| |||||| |||||||| |||||    
T  47452018 caaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacc 47452117  T
Q  490 tctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggtt 537  Q
    | |||| ||| || || | | |||| | |||||  |||||||||||||    
T  47452118 tttaatttcaagattatactcagattggggaagcaaaaaattaaggtt 47452165  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 11005978 - 11006041
Alignment:
Q  295 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 358  Q
    ||||||||||| ||| || ||||||||||||||||||||  ||||||| |||||||||||||||    
T  11005978 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 11024553 - 11024616
Alignment:
Q  295 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 358  Q
    ||||||||||| ||| || ||||||||||||||||||||  ||||||| |||||||||||||||    
T  11024553 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 677 - 783
Target Start/End: Original strand, 11006355 - 11006461
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatg 776  Q
    |||| ||||| ||||  ||||| || |||||||| |||||||||||||||||  | ||||| |||||||| | ||| ||||| ||||||||||| | | |    
T  11006355 gatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgagg 11006454  T
Q  777 cagatac 783  Q
    |||||||    
T  11006455 cagatac 11006461  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 648 - 770
Target Start/End: Original strand, 11024901 - 11025023
Alignment:
Q  648 aagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctt 747  Q
    |||||||||||| || || ||||| || ||||| ||||| ||||  ||||| || ||||||||||| ||||||||||| ||| | ||||| || |||||     
T  11024901 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 11025000  T
Q  748 accaaaatttgaatgatcaattc 770  Q
    | ||  ||||| |||||||||||    
T  11025001 aacatgatttgtatgatcaattc 11025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 421 - 545
Target Start/End: Original strand, 11024673 - 11024797
Alignment:
Q  421 tctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagatcgagga 520  Q
    |||||| |||||||||||||   | |||||||||||||||  ||||| |||||| |||||||| |||| | |||| ||| || || ||||||||   |||    
T  11024673 tctggtcgatggattccatagataaatgttggaagaacaagtcaaaactataaatcctctacaagaacttttaatttcaagattagaataagattcggga 11024772  T
Q  521 agtgaaaaattaaggttgagtgaag 545  Q
    ||   |||||||||||| |||||||    
T  11024773 agcataaaattaaggttaagtgaag 11024797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 11015644 - 11015754
Alignment:
Q  404 ggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggag 503  Q
    ||||||||||| |||  ||  || ||||||||||||| | ||||||| |||||||||  ||||| |||||| |||||||| |||| | |||| ||| ||     
T  11015644 ggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaagac 11015743  T
Q  504 taaaataagat 514  Q
    || ||||||||    
T  11015744 tagaataagat 11015754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 770
Target Start/End: Original strand, 47452300 - 47452393
Alignment:
Q  677 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 770  Q
    |||| ||||| ||||||||||| || ||| ||| ||||||||| |||| |||| | ||||| |||||||| ||||| || || || ||||||||    
T  47452300 gatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattc 47452393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 29696162 - 29696067
Alignment:
Q  404 ggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatca 499  Q
    |||||| |||| ||||||| |||||||||||||||||| |||| | | ||  |||| | ||||| |||||||||||||||||||||| ||| ||||    
T  29696162 ggtattcgtttgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctttaaaatca 29696067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 770
Target Start/End: Complemental strand, 29687728 - 29687643
Alignment:
Q  685 atgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 770  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| | ||||| || ||| |||  |  |||||||||||||||||    
T  29687728 atgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggatttgaatgatcaattc 29687643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 766
Target Start/End: Complemental strand, 1812140 - 1812021
Alignment:
Q  647 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 746  Q
    |||||| ||||||| |||| ||||| | | |||  ||||| |||||||||||  | |||||||| || ||| ||||||| ||||| ||||| || |||||    
T  1812140 taagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacct 1812041  T
Q  747 taccaaaatttgaatgatca 766  Q
     | ||||||||||| |||||    
T  1812040 caacaaaatttgaacgatca 1812021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 729
Target Start/End: Original strand, 42562729 - 42562776
Alignment:
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 729  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||||    
T  42562729 gagattagagaaaaccaagacttacaaacgcatttgaaacgaataaga 42562776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 29696261 - 29696203
Alignment:
Q  296 tcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 354  Q
    |||||||||| |||||  ||||||||||||||| |||||  |||||| |||||||||||    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 886 - 934
Target Start/End: Complemental strand, 179162 - 179113
Alignment:
Q  886 accctcaatttgtttccatgt-ttatctctgaatgagaaaaactccaaat 934  Q
    ||||||||||| ||||||||| |||||||| |||||||||| ||||||||    
T  179162 accctcaatttctttccatgtattatctctcaatgagaaaatctccaaat 179113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 24310227 - 24310168
Alignment:
Q  295 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 354  Q
    ||||||||| | | |||| |||||||||||||||||||||  ||||||||||||||||||    
T  24310227 atcataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 404 - 490
Target Start/End: Complemental strand, 24310133 - 24310047
Alignment:
Q  404 ggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 490  Q
    ||||||||| |||||| || ||||||||||||||||| | | ||||| ||| |||| | ||| |||||||| |||||||| ||||||    
T  24310133 ggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacct 24310047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 682 - 748
Target Start/End: Complemental strand, 24322142 - 24322076
Alignment:
Q  682 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctta 748  Q
    ||||| |||||||||||||| ||||||||||| |||||||| |||||| | |||||  |||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacctta 24322076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 24367203 - 24367144
Alignment:
Q  295 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 354  Q
    ||||||||| || ||||| ||||||||||||||| |||||  |||||| |||||||||||    
T  24367203 atcataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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