View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_low_10 (Length: 363)
Name: NF16978_low_10
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 21852350 - 21852057
Alignment:
| Q |
20 |
atagagttggcttatcaaaacaattgacacagtatttgattagaaacagactcctccttggtggttttagcatttcataaagagggttagattccttggt |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21852350 |
atagagttggcttatcaaaacaattgacacaatatttggttagaaacagactcctccttggtggtcttagcatttcataaagagggttagattccttggt |
21852251 |
T |
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| Q |
120 |
cccttacaaacagatggaacaatatgaagacaacgctgaagcagatgaattgcatggttactcacatatacagggttaannnnnnnnnnccttcaaataa |
219 |
Q |
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| T |
21852250 |
cctttacaaacagatggaacaatatgaagacaacgctgaagtagatgaattgcatggttactcacatatacagagttaa---tttttttccttcaaataa |
21852154 |
T |
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| Q |
220 |
gtgcatatttgaacaagtgcttatttaagctcttgagtcaaattttatgcactctaatagtgttcttttcagaatactttatttaaataattgtttc |
316 |
Q |
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| T |
21852153 |
gtgcatatttgaacaagtgcttatttaagcttttgagtcaaattttatgcactctaatagtgttcttttcagaatactttatttaaataattgtttc |
21852057 |
T |
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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 20023835 - 20023661
Alignment:
| Q |
18 |
ctatagagttggcttatcaaaacaattgacacagtatttgattagaaacagactcctccttggtggttttagcatttcataaagagggttagattccttg |
117 |
Q |
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|||||||| ||||||||||||| || || |||| ||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||| ||||| |
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| T |
20023835 |
ctatagagctggcttatcaaaataactggcacatcatttggttagaaacagattcttccttggtggtcttagcgtttcataaggagggctagatcccttg |
20023736 |
T |
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| Q |
118 |
gtccctt-acaaacagatggaacaatatgaagacaacgctgaagcagatgaattgcatggttactcacatatacag |
192 |
Q |
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||| ||| | || |||||| |||| || ||||||| | | ||||||||| |||||| ||| |||||||||||||| |
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| T |
20023735 |
gtctcttaaggaatagatggcacaacatcaagacaaagataaagcagatgtattgca-ggtaactcacatatacag |
20023661 |
T |
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