View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_low_14 (Length: 312)
Name: NF16978_low_14
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_14 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 2508 - 2800
Alignment:
| Q |
3 |
ttctttcaaattttcaacatattgaatgtaagaagtatatcaaatttatccattcccatttgggcaaatcagacatgtcacaattatgaggaggatggac |
102 |
Q |
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| T |
2508 |
ttcttccaaattttcaatatattgaacgtaagaagtatagcaaatttgttcattcccatttgggtaaatcaggcacgtcacaattatgaggaggatggcc |
2607 |
T |
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| Q |
103 |
ttgatcctcacatctacatttctatcactatcacaataaatacctctcaactcgagtaggctaagnnnnnnnnnnnattgaaaaaattcgatcgaaaact |
202 |
Q |
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| T |
2608 |
ttgatcctcacatctacatttctatcactatcacaacaaatacctctcaactcgaataagctaag-ttttttttttattgaaaaaatttgatcgaaagcc |
2706 |
T |
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| Q |
203 |
tgtaagtctttactgttaattgtgacaattgatcggcctataataggcaaatgggtgaaaaagaaaacatactccaatgtgacgttcatgtttt |
296 |
Q |
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| T |
2707 |
tgtaagtctttactattaattgggacaattggtcggtctgtaataggcaaatgggtcaaaaacaaaacgtcttccaatgtgacgttcatgtttt |
2800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 296
Target Start/End: Complemental strand, 24679588 - 24679326
Alignment:
| Q |
25 |
tgaatgtaagaagtatatcaaatttatccattcccatttgggcaaatcagacatgtcacaattatgaggaggatggacttgatcctcacatctacatttc |
124 |
Q |
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|||| ||||||| |||| |||||||| |||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||| ||| |
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| T |
24679588 |
tgaacgtaagaaatatagaaaatttattcattcccatttgggcaaatcaggcatgtcacaatcacgaggaggatgaacttgatcctcacat------ttc |
24679495 |
T |
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| Q |
125 |
tatcactatcacaataaatacctctcaactcgagtaggctaagnnnnnnnnnnnattgaaaaaattcgatcgaaaacttgtaagtctttactgttaattg |
224 |
Q |
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| T |
24679494 |
tatcactatcacaacaaatacctttcaactcgagtaggctaagtttttttt---attgaaaaaattcaatcaaaagcttgtaagtctttactgttaattg |
24679398 |
T |
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| Q |
225 |
tgacaattgatcggcctataataggcaaatgggtgaaaaagaaaacatactccaatgtgacgttcatgtttt |
296 |
Q |
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| T |
24679397 |
aggcaattggtcgacctgtagtaggcaaatgtgtcaaaaacaaaacatcctccaatgcgacgttcatgtttt |
24679326 |
T |
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