View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_low_15 (Length: 281)
Name: NF16978_low_15
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 10290380 - 10290210
Alignment:
| Q |
17 |
agaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagt |
116 |
Q |
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| T |
10290380 |
agaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaatgctccaacagttcttatgaacgacggtggtgagagacatgtaagt |
10290281 |
T |
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| Q |
117 |
gcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
187 |
Q |
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| T |
10290280 |
gcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
10290210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 10298758 - 10298669
Alignment:
| Q |
39 |
tgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
128 |
Q |
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| T |
10298758 |
tgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
10298669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 9747022 - 9747171
Alignment:
| Q |
39 |
tgaataccgtccgacaatgagagacatcaaaa-tggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcc |
137 |
Q |
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| T |
9747022 |
tgaataccgcccgacaatgagagatatcacaagtggtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattac |
9747121 |
T |
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| Q |
138 |
tcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
187 |
Q |
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| T |
9747122 |
tcattccttttcaaccctcatttctgcagaagaattcgttcatacttatt |
9747171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 10290155 - 10290079
Alignment:
| Q |
194 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgatattct |
270 |
Q |
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| T |
10290155 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttct |
10290079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
| Q |
129 |
ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
187 |
Q |
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| T |
10298525 |
ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt |
10298467 |
T |
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