View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_low_16 (Length: 268)
Name: NF16978_low_16
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_16 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 353180 - 353440
Alignment:
| Q |
2 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
101 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
353180 |
catgtcatccactccatgaacactagcagtcctatcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
353279 |
T |
|
| Q |
102 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
201 |
Q |
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|||||||||| |||||||||||||||| || ||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
353280 |
atgcaagactaaacgaatgactcaggtgtgaacatctggtatgcggggtataggcgagcataatagagagactgatagatgcctcggtggctcctgaaaa |
353379 |
T |
|
| Q |
202 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
353380 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
353440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 27351865 - 27351605
Alignment:
| Q |
2 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
101 |
Q |
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||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
27351865 |
catgtcatccactccgtgaacactagcagtcctctcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcatgtccccaggccac |
27351766 |
T |
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| Q |
102 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
201 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27351765 |
atgcaagactccacgaatgactcaggtctgagcatctggtatgcggggttttggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
27351666 |
T |
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| Q |
202 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
262 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
27351665 |
gcgcagcattctggtccattaaaaaatgatcttgctgctcttgtctctgatatctctgctc |
27351605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 29225108 - 29224847
Alignment:
| Q |
2 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
101 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29225108 |
catgtcatccactccatgaacattagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
29225009 |
T |
|
| Q |
102 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
201 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| || |||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29225008 |
atgcaagactacacgaatgactcaggtgtgagcatctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaa |
29224909 |
T |
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| Q |
202 |
gcgcagcattctggtccattaa-aaaatgatctcgctgctcctgtctctgatatctctgctc |
262 |
Q |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29224908 |
gtgcagcattctggtccattaaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
29224847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 29338407 - 29338146
Alignment:
| Q |
2 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
101 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29338407 |
catgtcatccactccatgaacattagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
29338308 |
T |
|
| Q |
102 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
201 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| || |||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29338307 |
atgcaagactacacgaatgactcaggtgtgagcatctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaa |
29338208 |
T |
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| Q |
202 |
gcgcagcattctggtccattaa-aaaatgatctcgctgctcctgtctctgatatctctgctc |
262 |
Q |
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| T |
29338207 |
gtgcagcattctggtccattaaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
29338146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 183571 - 183314
Alignment:
| Q |
2 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
183571 |
catgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
183472 |
T |
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| Q |
102 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
201 |
Q |
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||| |||||||||||||||||||||||| |||||||||||| || |||| | |||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
183471 |
atgtaagactccacgaatgactcaggtgtgagcatctggtatgcggggttttggcgagcatcatagagagactgatagatacctcgatggcttctgaaaa |
183372 |
T |
|
| Q |
202 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctctg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
183371 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgcatctggtatctctg |
183314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 1949440 - 1949671
Alignment:
| Q |
30 |
gtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccacatgcaagactccacgaatgactcaggtg |
129 |
Q |
| |
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||||||||||||||||||| ||||||| |||| ||| |||||| |||||||| |||||||||||| |||||||||||||| |||| |||||| ||||| |
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| T |
1949440 |
gtcctatcatcatcttccgttgcaccatagtgctcagtccctccatagaaagttggcctgtccccaagccacatgcaagacgccacatatgactgaggtg |
1949539 |
T |
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| Q |
130 |
cgagcatctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaatg |
229 |
Q |
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| ||||||||| || |||||||||||||||| ||| ||||||||||| |||| |||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
1949540 |
tcaacatctggtatgcggggtctaggcgagcattataaagagactgata---gccttggtgactcctgaaaagcgcagcgttctggtccattatgaaatg |
1949636 |
T |
|
| Q |
230 |
atctcgctgctcctgtctctgatatctctgctcct |
264 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| |
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| T |
1949637 |
atcctgctgctcctgtctctgatatctctgttcct |
1949671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 1952974 - 1952753
Alignment:
| Q |
34 |
tatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccacatgcaagactccacgaatgactcaggtgcgag |
133 |
Q |
| |
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||||||||||||||| ||||||| |||| |||| |||||| |||||||| || |||||||||||||||||||||||| ||| | |||||| ||||| | |
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| T |
1952974 |
tatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccatgtatgactgaggtgtcaa |
1952875 |
T |
|
| Q |
134 |
catctggtaggcagggtctaggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaatgatct |
233 |
Q |
| |
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||||||||| || |||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||| ||||||||||||| |||||||| |
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| T |
1952874 |
catctggtatgcggggtctaggcgagcatcataaagagactgata---gccttggtgactcctgaaaagcgcagcgttctggtccattatgaaatgatcc |
1952778 |
T |
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| Q |
234 |
cgctgctcctgtctctgatatctct |
258 |
Q |
| |
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||||||| ||| |||||||||||| |
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| T |
1952777 |
tgctgctcatgtttctgatatctct |
1952753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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