View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_low_18 (Length: 264)
Name: NF16978_low_18
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7178311 - 7178184
Alignment:
| Q |
1 |
ttatcattaaatatgatgcatcaccttgtttattgtttttctcttcattggtaaggagacactatgagaaagtacacctgcgtccctcacttcaagactg |
100 |
Q |
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| T |
7178311 |
ttatcattaaatatgatgcatcaccttgtttattgtttttctcttctttggtaaggagacactatgagaaagtacacttgtatccctcacttcaagactg |
7178212 |
T |
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| Q |
101 |
ttatcttcctccttggcctcaacgtcct |
128 |
Q |
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| T |
7178211 |
ttatcttcctccttggcctcaacgtcct |
7178184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7168424 - 7168297
Alignment:
| Q |
1 |
ttatcattaaatatgatgcatcaccttgtttattgtttttctcttcattggtaaggagacactatgagaaagtacacctgcgtccctcacttcaagactg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |||||| |||||||||||| |||||||||||||||||| |
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| T |
7168424 |
ttatcattaaatatgatgcatcaccttgttcattgtttttctcttctttgataaggagacattatgaggaagtacacctgcatccctcacttcaagactg |
7168325 |
T |
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| Q |
101 |
ttatcttcctccttggcctcaacgtcct |
128 |
Q |
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| T |
7168324 |
ttatcttcatccttggcctcaatgtcct |
7168297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 7178165 - 7178090
Alignment:
| Q |
184 |
ctcttataagatacaacataaacatttatatataaagttttaatgcttcacctattctattttatcctttgcttct |
259 |
Q |
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| T |
7178165 |
ctcttataagatacaacataaacatttatatataaagttttaattcttcaccttttctattttatcctttgattct |
7178090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 7168209 - 7168176
Alignment:
| Q |
183 |
cctcttataagatacaacataaacatttatatat |
216 |
Q |
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| T |
7168209 |
cctcttataagatacaacataaacatttatatat |
7168176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 7168157 - 7168106
Alignment:
| Q |
203 |
aaacatttatatataaagttttaatgcttcacctattctattttatcctttg |
254 |
Q |
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|||||||| ||||||||||||||||||||||||| | || |||| ||||||| |
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| T |
7168157 |
aaacatttttatataaagttttaatgcttcacctttccttttttttcctttg |
7168106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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