View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16978_low_21 (Length: 238)
Name: NF16978_low_21
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 38016480 - 38016680
Alignment:
| Q |
18 |
aaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggtgagcaaaatca |
117 |
Q |
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| T |
38016480 |
aaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggtgagcaaaatca |
38016579 |
T |
|
| Q |
118 |
atgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatctgaa-ttgatgtgagattctttgctgaacatgttcactctctactc |
216 |
Q |
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|||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||| |
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| T |
38016580 |
atgtattttaatgggttgaaaccaacagatcaagatgcagatgattttaagatctgaatttgatgtgagattctttgttcgacatgttcactctctactc |
38016679 |
T |
|
| Q |
217 |
a |
217 |
Q |
| |
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| |
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|
| T |
38016680 |
a |
38016680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 16961037 - 16961202
Alignment:
| Q |
8 |
aaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggtg |
107 |
Q |
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||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||| |
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| T |
16961037 |
aaataaacataaataaacccaaatatttaattctaaaattaacaaattagcatacatcagattgtgatagattgaatacctggagaaatggaattaggtc |
16961136 |
T |
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| Q |
108 |
agcaaaatcaatgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatctg |
173 |
Q |
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| T |
16961137 |
agcaaaatcaatgttttttcatgggttaaaaccaacaaatcgagatgcagaggattttgagatctg |
16961202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 25868873 - 25868707
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggt |
106 |
Q |
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||||||||| |||| ||||||| |||||||||| ||||| ||| ||||||||||| | || |||| ||||||||||||||||||| |||||||||||||| |
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| T |
25868873 |
caaataaacttaaataaacccagatatttaattctaaaattaataaattagcatacatcagattgggatagattgaatacctggataaatggaattaggt |
25868774 |
T |
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| Q |
107 |
gagcaaaatcaatgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatctg |
173 |
Q |
| |
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| T |
25868773 |
cagcaaaatcaatgttttttcatgggttaaaaccaacatattgagatgcagaggatttcgagatctg |
25868707 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 4435675 - 4435509
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggt |
106 |
Q |
| |
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||||||||| |||| ||||||| |||||||||| ||||| ||||||||||||||| | || |||| ||||||||||||||||||||||||| |||||||| |
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| T |
4435675 |
caaataaacttaaataaacccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattgaatacctggagaaatgaaattaggt |
4435576 |
T |
|
| Q |
107 |
gagcaaaatcaatgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatctg |
173 |
Q |
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||||||||||||||||||| || |||| ||||||||| ||||||||||||| ||||| |||||||| |
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| T |
4435575 |
cagcaaaatcaatgtattttcatgggttaaaaccaacagatcgagatgcagaggatttcgagatctg |
4435509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 4091896 - 4091797
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggt |
106 |
Q |
| |
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|||||||||||||| ||||||| |||||||||| | ||| ||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||| |
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| T |
4091896 |
caaataaacataaataaacccagatatttaattctgaaattaacaaattagcatacatcagattgggatagattgaatacctggagaaatggaattaggt |
4091797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 46595163 - 46595329
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggt |
106 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||| ||||| ||||||||||||||| | || |||| ||||||||||||||||||||||||| |||||||| |
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| T |
46595163 |
caaataaacttaaataaacccagatatttaattctaaaattaacaaattagcatacatcagattgggatagattgaatacctggagaaatgaaattaggt |
46595262 |
T |
|
| Q |
107 |
gagcaaaatcaatgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatctg |
173 |
Q |
| |
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||||||||||||||||||| || |||| ||||||||| ||||||||||||| ||||| |||||||| |
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| T |
46595263 |
cagcaaaatcaatgtattttcatgggttaaaaccaacagatcgagatgcagaggatttcgagatctg |
46595329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 37719405 - 37719570
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggt |
106 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||| ||||| || |||||||||||| | || |||| ||||||||||||||||||||||||| |||||||| |
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| T |
37719405 |
caaataaacttaaataaacccagatatttaattctaaaattagcaaattagcatacatcagattgggatagattgaatacctggagaaatgaaattaggt |
37719504 |
T |
|
| Q |
107 |
gagcaaaatcaatgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatctg |
173 |
Q |
| |
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|||||||||||||| |||| || |||| ||||||||| ||||||||||||| ||||| |||||||| |
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| T |
37719505 |
cagcaaaatcaatgttttttcat-ggttaaaaccaacagatcgagatgcagaggatttcgagatctg |
37719570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 30440633 - 30440804
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggt |
106 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||| | ||||||||||||| |||| |||| ||||||||| |||||||||||||| |
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| T |
30440633 |
caaataaacataaataaacccagatatttaattctaaaattcacaaattagcatacaacaaattg----------aatacctgggaaaatggaattaggt |
30440722 |
T |
|
| Q |
107 |
gagcaaaatcaatgtattttaataggttgaaaccaacatatcgagatgcagatgattttgagatct-gaattgatgtgagat |
187 |
Q |
| |
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||||||||||||| ||||| || |||| ||||||||| ||| ||||| ||| ||||||||||||| || |||||||||||| |
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|
| T |
30440723 |
cagcaaaatcaatgaattttcatgggttaaaaccaacaaatctagatgtagaggattttgagatctggatttgatgtgagat |
30440804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 47521158 - 47521067
Alignment:
| Q |
7 |
caaataaacataaacaaacccacatatttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatgg |
98 |
Q |
| |
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||||| |||||| | ||||||| |||||| ||| ||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
47521158 |
caaatgaacatatataaacccatatatttgattctaaaattaacaaattagcatacatcagattgagatagattgaatacctggagaaatgg |
47521067 |
T |
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