View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16978_low_22 (Length: 234)

Name: NF16978_low_22
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16978_low_22
NF16978_low_22
[»] chr4 (3 HSPs)
chr4 (15-217)||(16842950-16843152)
chr4 (18-128)||(16845838-16845948)
chr4 (27-171)||(24217866-24218010)
[»] chr5 (13 HSPs)
chr5 (18-216)||(37594211-37594409)
chr5 (27-207)||(37711520-37711700)
chr5 (18-207)||(37400962-37401151)
chr5 (25-217)||(37435589-37435793)
chr5 (18-217)||(37639753-37639958)
chr5 (18-217)||(37392966-37393165)
chr5 (78-207)||(37702615-37702744)
chr5 (18-207)||(37823776-37823971)
chr5 (27-215)||(37696611-37696805)
chr5 (18-159)||(37428612-37428754)
chr5 (99-215)||(37533062-37533184)
chr5 (8-159)||(37382473-37382624)
chr5 (27-158)||(37413395-37413526)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 16843152 - 16842950
Alignment:
Q  15 aaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16843152 aaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccaaatgtcattccatgtgtttaagagcttcttatgaaac 16843053  T
Q  115 catttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgagata 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16843052 catttgggaattttaccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcataagata 16842953  T
Q  215 aat 217  Q
    |||    
T  16842952 aat 16842950  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 16845948 - 16845838
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||  |||||||| ||||| | |||||||||||||||||||||||||    
T  16845948 gccataatatggaattggaatgtctccttgcaatttgttgaaactgaggtcaatgtgtcgaatgtccttccacgagtttaagagcttcttatgaaaccat 16845849  T
Q  118 ttgggaatttt 128  Q
    || ||||||||    
T  16845848 tttggaatttt 16845838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 24218010 - 24217866
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||| |||| |||||||||||| ||||||||||| |||| |||    ||||| || |||||||||| ||||||||||| |||||||||||| |||| |    
T  24218010 tggaatcggaaggtctccttgcaacttgttgaaactgagattaataattcgaatttccttccatgtgtgtaagagcttctcatgaaaccatttaggaact 24217911  T
Q  127 tttccatgaatgttgttattggagagatctaatctttgaagattt 171  Q
    ||||| ||||| |||||||| ||||||||||||| ||| ||||||    
T  24217910 tttccttgaattttgttattagagagatctaatccttgcagattt 24217866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 37594211 - 37594409
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||| ||| |||||||||||  |||||||| || ||||||||||| |  |||||||||  ||| |||||||||| |||||||||||||||||||||||||    
T  37594211 gccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtacgaaatctcattccatgagtttaagagcttcttatgaaaccat 37594310  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgagataaa 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  37594311 ttgggaattttcccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagaataagataaa 37594409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 37711520 - 37711700
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||||||||  |||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  37711520 tggaattggaagatctccttgcaacatgttgaaactaagatcaatgtaccgaatgtccttccatgagtttaagagcttcgtatgaaaccatttgggaatt 37711619  T
Q  127 tttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagca 207  Q
    || |||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  37711620 ttcccatgaatgttgttgttggagagatctaatgtttgcagatttcgtgcttggaatttaggaaaactattaatattagca 37711700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 37401151 - 37400962
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||| ||| |||||||||||  |||||||| || ||||||||||| || || | |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  37401151 gccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtctaagtactgaatgtccttccatgagtttaagagcttcttatgaaaccat 37401052  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagca 207  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||||  |||||||||| | |||||||||||||||||||||||||||||    
T  37401051 ttgggaattttcccacgaatgttgttattggagagatataatcttttcagatttcgtgctgggaatttaggaaaactattaatattagca 37400962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 37435589 - 37435793
Alignment:
Q  25 gatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcat------------tccatgtgtttaagagcttcttatgaa 112  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| | ||| ||||            || ||||||||||||||||||||||||    
T  37435589 gatggaattggaatgtctccttgcaatttgttgaaactgaggtcaatgtaactaatttcatgggcaatatcattcaatgtgtttaagagcttcttatgaa 37435688  T
Q  113 accatttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgaga 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||  ||||||||||||||||||||||||||||||  |||    
T  37435689 accatttgggaattttcccatgaatgttgttattggagagatctaatgtttgaagtttttgtgcgtggaatttaggaaaactattaatattagcagaaga 37435788  T
Q  213 taaat 217  Q
    |||||    
T  37435789 taaat 37435793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 37639753 - 37639958
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    ||||| || |||||||||||  | |||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37639753 gccatcaggtggaattggaagatgtccttgcaacatgttgaaactaagatcaatgtaccgaatgtccttccatgtgtttaagagcttcttatgaaaccat 37639852  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatt------tcgtgtttggaatttaggaaaactattaatattagcatgag 211  Q
    ||||||||||| ||||||||||||||||||||||||||||| | ||| | |||      ||||| | ||||||| |||||||| ||||||||||||  ||    
T  37639853 ttgggaattttcccatgaatgttgttattggagagatctaaccattgcaaattatgtactcgtgctaggaatttgggaaaacttttaatattagcagaag 37639952  T
Q  212 ataaat 217  Q
    ||||||    
T  37639953 ataaat 37639958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 37393165 - 37392966
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    ||||| || |||||||||||  || ||||| || ||||||||||| || |||||||    |||||| ||||||| |||||||||||||||||||||||||    
T  37393165 gccatcaggtggaattggaagatcaccttgtaacttgttgaaactcaggtcaatgtgtataatgtccttccatgagtttaagagcttcttatgaaaccat 37393066  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtttggaatttaggaaaactattaatattagcatgagataaat 217  Q
    ||||||||| |  ||||||||||| |||||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||| ||||  |||||||    
T  37393065 ttgggaattctcgcatgaatgttgctattggagagatctaagctttccagatttcgtgcttggaatttaggaaaactattaatattggcatatgataaat 37392966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 37702615 - 37702744
Alignment:
Q  78 aatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgtgtt 177  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||| ||| |    
T  37702615 aatgtccttccatgagtttaagagtttcttatgaaaccatttgggaattttcccatgaatgtagttattggagagatctaatgtttgcagattttgtgct 37702714  T
Q  178 tggaatttaggaaaactattaatattagca 207  Q
    ||||||||||||||||||||||||||||||    
T  37702715 tggaatttaggaaaactattaatattagca 37702744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 37823776 - 37823971
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||| ||| |||||||||||  |||||||| || ||||||||||| || |||| | ||| |||||| ||||||| |||||||||||||||||||||||||    
T  37823776 gccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtcaacggaccaaatgtccttccatgagtttaagagcttcttatgaaaccat 37823875  T
Q  118 ttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgt------gtttggaatttaggaaaactattaatattagca 207  Q
    ||||||||||| |||||||||||||| |||||||||||||||  ||| |||||| ||      | | |||||||||||||||||||||||||||||    
T  37823876 ttgggaattttcccatgaatgttgttgttggagagatctaatgattgcagatttggtagttgcgctaggaatttaggaaaactattaatattagca 37823971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 37696611 - 37696805
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||||||||  |||||||| || ||||||||||| || || | || | ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  37696611 tggaattggaagatctccttgtaacttgttgaaactgaggtctaagtcctgaatgtccttccatgagtttaagagcttcttatgaaaccatttgggaatt 37696710  T
Q  127 tttccatgaatgttgttattggagagatctaatctttgaagatttcgt------gtttggaatttaggaaaactattaatattagcatgagataa 215  Q
    || |||||||||||||| ||||||||||||||   ||| |||||| ||      | | |||||||||||||||||||||||||||||| ||||||    
T  37696711 ttcccatgaatgttgttgttggagagatctaacgattgcagatttggtagttgcgctaggaatttaggaaaactattaatattagcattagataa 37696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 37428612 - 37428754
Alignment:
Q  18 gccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccat 117  Q
    |||||||| |||||||||||  ||||||||||| ||||||||||| ||||||| || || ||| |  ||||||| |||||||||| | ||||||||||||    
T  37428612 gccataaggtggaattggaagatctccttgcaacttgttgaaactgagatcaacgtgccaaatatacttccatgagtttaagagcattttatgaaaccat 37428711  T
Q  118 ttgggaattttt-ccatgaatgttgttattggagagatctaat 159  Q
     ||| ||||||| |||||||||||||| |||||||||||||||    
T  37428712 atggaaatttttcccatgaatgttgtttttggagagatctaat 37428754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 37533062 - 37533184
Alignment:
Q  99 gagcttcttatgaaaccatttgggaatttttccatgaatgttgttattggagagatctaatctttgaagatttcgt------gtttggaatttaggaaaa 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||   ||| |||||| ||      | | ||||||||||||||    
T  37533062 gagcttcttatgaaaccatttgggaattttcccatgaatgttgttgttggagagatctaacgattgcagatttggtagttgcgctaggaatttaggaaaa 37533161  T
Q  193 ctattaatattagcatgagataa 215  Q
    |||||||||||||||| ||||||    
T  37533162 ctattaatattagcattagataa 37533184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 37382624 - 37382473
Alignment:
Q  8 agtagcaaaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttctt 107  Q
    ||||| ||| |||||||  ||| |||||||  ||||||||||| ||||||||||| |||||||  |   |||||||  ||||||||| |||||||||||     
T  37382624 agtagtaaatgccataacgtgggattggaagatctccttgcaacttgttgaaactgagatcaacatgttgaatgtccctccatgtgtgtaagagcttctc 37382525  T
Q  108 atgaaaccatttgggaatttttccatgaatgttgttattggagagatctaat 159  Q
    |||||||||||| |||| ||| || ||||| ||||| || ||||||||||||    
T  37382524 atgaaaccatttaggaactttcccttgaattttgtttttagagagatctaat 37382473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 37413526 - 37413395
Alignment:
Q  27 tggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccgaatgtcattccatgtgtttaagagcttcttatgaaaccatttgggaatt 126  Q
    |||||||||||  ||||||||||| ||||||||||| ||||| || |  ||||| ||  ||||||||| ||||||||||| |||||||||||| |||| |    
T  37413526 tggaattggaagatctccttgcaacttgttgaaactgagatcgatatgtcgaatttccctccatgtgtgtaagagcttctcatgaaaccatttaggaact 37413427  T
Q  127 tttccatgaatgttgttattggagagatctaa 158  Q
    ||||| |||||  ||||||| || ||||||||    
T  37413426 tttccttgaattatgttattagatagatctaa 37413395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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