View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16978_low_3 (Length: 642)
Name: NF16978_low_3
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16978_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 147 - 626
Target Start/End: Original strand, 49411917 - 49412396
Alignment:
| Q |
147 |
gcaagagttgaaattgttggtctaatatggttaatggcatgtttgtggggaacggcaaaaactccactaactcggcatccaaggctcttggaattttcat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49411917 |
gcaagagttgaaattgttggtctaatatggttaatggcatgtttgtggggaacggcaaaaactccactaactcggcatccaaggctcttggaattttcat |
49412016 |
T |
|
| Q |
247 |
attgaatttttgatggtttgaaaggcaaaaaattgtagggttttgatggggtttgtttgtcattgtatgtgaacatgggttgtgttgtgggagtagaaaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49412017 |
attgaatttttgatggtttgaaaggcaaaaaattgtagggttttgatggggtttgtttgtcattgtatgtgaacatgggttgtgttgtgggagtagaaaa |
49412116 |
T |
|
| Q |
347 |
ttggtgtttaagtatttatcactaagctcaacaaagaagcttttatgggcaactttttggatttattaccttattattgatattgaaggttgggaaagga |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49412117 |
ttggtgtttaagtatttatcactaagctcaacaaagaagcttttatgggcaactttttggatttattaccttattattgatattgaaggttgggaaagga |
49412216 |
T |
|
| Q |
447 |
aagattatgcgtagtgtgtagtggggcattaaccttgattggagtgaatggatatgggggcgggtgattggcccaagatgcagctaaccccaccaatttg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49412217 |
aagattatgcgtagtgtgtagtggggcattaaccttgattggagtgaatggatatgggggcgggtgattggcccaagatgcagctaaccccaccaatttg |
49412316 |
T |
|
| Q |
547 |
tgcatccaattttacgcggatgattgagtaatgagcaccaaattcttctatcattaatacttatctcaattcattgtttt |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49412317 |
tgcatccaattttacgcggatgattgagtaatgagcaccaaattcttctatcattaatacttatctcaattcattgtttt |
49412396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 49411774 - 49411827
Alignment:
| Q |
4 |
agtggagaagcatagggacaaggggagacatgatgggccgtatataaaggcgaa |
57 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49411774 |
agtgaagaagcttagggacaaggggagacatgatgggtcgtatataaaggcgaa |
49411827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University