View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16978_low_6 (Length: 460)

Name: NF16978_low_6
Description: NF16978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16978_low_6
NF16978_low_6
[»] chr4 (32 HSPs)
chr4 (148-265)||(46765099-46765216)
chr4 (148-265)||(12589287-12589404)
chr4 (148-267)||(11681203-11681322)
chr4 (148-267)||(11689482-11689601)
chr4 (338-444)||(11681026-11681132)
chr4 (338-444)||(11689305-11689411)
chr4 (153-267)||(25654729-25654843)
chr4 (338-444)||(46764921-46765026)
chr4 (338-444)||(12589477-12589582)
chr4 (349-444)||(25654925-25655019)
chr4 (153-267)||(31634748-31634862)
chr4 (149-196)||(25370507-25370554)
chr4 (148-267)||(52757813-52757932)
chr4 (155-219)||(11680283-11680348)
chr4 (155-219)||(11688562-11688627)
chr4 (155-219)||(25655615-25655680)
chr4 (147-195)||(21165446-21165494)
chr4 (155-195)||(46764259-46764299)
chr4 (353-444)||(52758007-52758099)
chr4 (186-254)||(53290178-53290246)
chr4 (347-390)||(3619636-3619679)
chr4 (148-195)||(26611284-26611331)
chr4 (148-215)||(47377579-47377646)
chr4 (347-390)||(53290035-53290078)
chr4 (149-195)||(3847887-3847933)
chr4 (145-195)||(36865718-36865768)
chr4 (148-225)||(1013977-1014054)
chr4 (155-219)||(12590179-12590244)
chr4 (173-254)||(23383335-23383416)
chr4 (148-225)||(48091104-48091181)
chr4 (155-195)||(38014923-38014963)
chr4 (148-196)||(55864875-55864923)
[»] chr6 (17 HSPs)
chr6 (153-267)||(10607406-10607520)
chr6 (338-444)||(931593-931699)
chr6 (148-267)||(931770-931891)
chr6 (338-444)||(10607591-10607698)
chr6 (148-196)||(29997645-29997693)
chr6 (146-196)||(4826396-4826446)
chr6 (155-194)||(930930-930969)
chr6 (148-215)||(24125972-24126039)
chr6 (155-219)||(1034728-1034793)
chr6 (148-196)||(29998175-29998223)
chr6 (148-195)||(3543064-3543111)
chr6 (148-215)||(7159322-7159389)
chr6 (153-195)||(3542819-3542861)
chr6 (155-219)||(10608296-10608361)
chr6 (146-195)||(24126719-24126768)
chr6 (146-195)||(33480629-33480678)
chr6 (148-188)||(26226603-26226643)
[»] chr1 (7 HSPs)
chr1 (17-147)||(33741340-33741468)
chr1 (148-267)||(45064686-45064805)
chr1 (146-267)||(49610704-49610825)
chr1 (148-196)||(8561736-8561784)
chr1 (145-195)||(43737726-43737776)
chr1 (178-219)||(4640558-4640599)
chr1 (153-194)||(49611562-49611603)
[»] chr5 (12 HSPs)
chr5 (146-267)||(16970962-16971083)
chr5 (344-420)||(16970806-16970882)
chr5 (148-267)||(8226642-8226761)
chr5 (148-196)||(2319266-2319314)
chr5 (148-196)||(26268344-26268392)
chr5 (148-196)||(26269021-26269069)
chr5 (148-196)||(2319967-2320015)
chr5 (148-195)||(33284024-33284071)
chr5 (153-195)||(33283170-33283212)
chr5 (150-196)||(39166591-39166637)
chr5 (142-211)||(7625467-7625536)
chr5 (146-195)||(39950402-39950451)
[»] chr2 (7 HSPs)
chr2 (148-267)||(16427216-16427335)
chr2 (148-196)||(41984727-41984775)
chr2 (148-219)||(40992222-40992294)
chr2 (148-196)||(41043328-41043376)
chr2 (148-195)||(14573261-14573308)
chr2 (146-195)||(16426551-16426600)
chr2 (173-221)||(36390982-36391030)
[»] chr7 (23 HSPs)
chr7 (154-267)||(29315240-29315353)
chr7 (344-420)||(41224315-41224391)
chr7 (153-240)||(41224114-41224201)
chr7 (145-196)||(48259243-48259294)
chr7 (148-196)||(45887980-45888028)
chr7 (148-196)||(46757377-46757425)
chr7 (344-420)||(29315083-29315156)
chr7 (142-196)||(47331953-47332007)
chr7 (155-219)||(44896053-44896118)
chr7 (149-194)||(48259820-48259865)
chr7 (147-195)||(24322352-24322400)
chr7 (148-196)||(45887279-45887327)
chr7 (148-218)||(29006347-29006418)
chr7 (148-218)||(29007176-29007247)
chr7 (148-196)||(4984809-4984856)
chr7 (148-196)||(4985394-4985442)
chr7 (148-196)||(4989492-4989540)
chr7 (170-258)||(30915756-30915844)
chr7 (155-195)||(44909360-44909400)
chr7 (155-195)||(20890206-20890246)
chr7 (148-219)||(41224819-41224891)
chr7 (155-195)||(41533903-41533943)
chr7 (152-195)||(47331260-47331304)
[»] chr8 (15 HSPs)
chr8 (155-267)||(30272885-30272997)
chr8 (155-267)||(36936626-36936738)
chr8 (155-267)||(36936347-36936459)
chr8 (155-219)||(41348151-41348216)
chr8 (148-219)||(43924490-43924561)
chr8 (186-267)||(41092732-41092813)
chr8 (148-195)||(25876521-25876568)
chr8 (347-390)||(30272764-30272807)
chr8 (148-195)||(34992265-34992312)
chr8 (347-390)||(36936226-36936269)
chr8 (347-390)||(36936505-36936548)
chr8 (365-420)||(41092577-41092632)
chr8 (147-219)||(41092171-41092244)
chr8 (147-195)||(1365828-1365876)
chr8 (173-221)||(40450961-40451009)
[»] chr3 (9 HSPs)
chr3 (166-249)||(46740512-46740595)
chr3 (146-267)||(46721887-46722008)
chr3 (147-267)||(38742103-38742223)
chr3 (347-444)||(38741930-38742028)
chr3 (147-219)||(38336943-38337015)
chr3 (148-219)||(38337454-38337525)
chr3 (144-224)||(44406931-44407011)
chr3 (146-195)||(45242988-45243037)
chr3 (178-263)||(50305401-50305486)
[»] scaffold0180 (1 HSPs)
scaffold0180 (177-267)||(22171-22261)
[»] scaffold0155 (1 HSPs)
scaffold0155 (146-195)||(17337-17386)
[»] scaffold0189 (1 HSPs)
scaffold0189 (146-194)||(12182-12230)
[»] scaffold0041 (1 HSPs)
scaffold0041 (147-195)||(27576-27624)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 46765216 - 46765099
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46765216 ggtggcatttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatacagtcatatcatactccctc 46765117  T
Q  248 aatactatattgttctcc 265  Q
    ||||||||||||||||||    
T  46765116 aatactatattgttctcc 46765099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 12589287 - 12589404
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  12589287 ggtgacatttaatttgggaaagattagttttttcccactatgggaaagcaagtttcaaccattagattaaatgaagaatacattcatatcatactccctc 12589386  T
Q  248 aatactatattgttctcc 265  Q
    ||||||||||||||||||    
T  12589387 aatactatattgttctcc 12589404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 11681322 - 11681203
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  11681322 ggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagattaaatgaagagtacagtcatatcatactccctc 11681223  T
Q  248 aatactatattgttctccct 267  Q
    ||||||||||||||||||||    
T  11681222 aatactatattgttctccct 11681203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 11689601 - 11689482
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  11689601 ggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagattaaatgaagagtacagtcatatcatactccctc 11689502  T
Q  248 aatactatattgttctccct 267  Q
    ||||||||||||||||||||    
T  11689501 aatactatattgttctccct 11689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 11681132 - 11681026
Alignment:
Q  338 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  11681132 tccaacagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatctaaga 11681033  T
Q  438 ttgatat 444  Q
    |||||||    
T  11681032 ttgatat 11681026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 11689411 - 11689305
Alignment:
Q  338 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  11689411 tccaacagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatctaaga 11689312  T
Q  438 ttgatat 444  Q
    |||||||    
T  11689311 ttgatat 11689305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 25654729 - 25654843
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatac 252  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25654729 catttaatttgggaaagactagttttttcccaccatggaaaaacaagtttcaaccattaaattaaatgaagaatacagtcatatcatactccctcaatac 25654828  T
Q  253 tatattgttctccct 267  Q
    |||||||||||||||    
T  25654829 tatattgttctccct 25654843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 46765026 - 46764921
Alignment:
Q  338 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 437  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46765026 tccaacagtaccattataaccaccac-accatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatcaaaga 46764928  T
Q  438 ttgatat 444  Q
    |||||||    
T  46764927 ttgatat 46764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 444
Target Start/End: Original strand, 12589477 - 12589582
Alignment:
Q  338 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 437  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  12589477 tccaacagtaccattataaccaccac-accatcatgtttaacacatagatctccatcactctttctacattttgtgataatttgattatttgatcaaaga 12589575  T
Q  438 ttgatat 444  Q
    |||||||    
T  12589576 ttgatat 12589582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 25654925 - 25655019
Alignment:
Q  349 cattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaagattgatat 444  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25654925 cattataaccaccac-accatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatcaaagattgatat 25655019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 31634862 - 31634748
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatac 252  Q
    ||||||||||| |||||| ||||||||| ||| ||||| |||| |||||| |||||||||||  ||||||||||| | || |||||||||||||||| ||    
T  31634862 catttaatttgagaaagactagtttttttccatcatggaaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctcaacac 31634763  T
Q  253 tatattgttctccct 267  Q
    |  ||| ||||||||    
T  31634762 tcaatttttctccct 31634748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 25370507 - 25370554
Alignment:
Q  149 gtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagc 25370554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 52757813 - 52757932
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    |||| ||||||||||||||||||  | ||||||||| |||| |||||| |||||| || | |||||||||||  |||| | | || |||||| |||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttccctccataggaaagtaagttttaatctttagattaaatagagaacatactcttatcatgctccctc 52757912  T
Q  248 aatactatattgttctccct 267  Q
    |||| || ||| ||||||||    
T  52757913 aatattagatttttctccct 52757932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 11680283 - 11680348
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    ||||||||||||||| |||||||||||||||||||||||||  || |||  |||||||||||||||    
T  11680283 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaat 11680348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 11688562 - 11688627
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    ||||||||||||||| |||||||||||||||||||||||||  || |||  |||||||||||||||    
T  11688562 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaat 11688627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 25655680 - 25655615
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    |||||||||||||||| ||||||||||||||||||||||||  || |||  |||||||||||||||    
T  25655680 tttaatttgggaaagactagttttttcccaccatgggaaagttagtttttgaccattagattaaat 25655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 21165446 - 21165494
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  21165446 tggtgccatttaatttgggaaagaatagttctttcccaccatgagaaag 21165494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 46764259 - 46764299
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  46764259 tttaatttggaaaagactagttttttcccaccatgggaaag 46764299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 52758007 - 52758099
Alignment:
Q  353 ataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgatt-attcgatcaaagattgatat 444  Q
    ||||||||||||| || |||||||||||  || |||||  ||||| | |||| |||||||||| |||||||| ||| ||||||| ||||||||    
T  52758007 ataaccaccaccatcaccatgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatat 52758099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 53290246 - 53290178
Alignment:
Q  186 catgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 254  Q
    |||||||||| |||||| |||||||||||| ||||||||||| | |  ||||||||||| || ||||||    
T  53290246 catgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactccttcgatacta 53290178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 3619679 - 3619636
Alignment:
Q  347 accattataaccaccaccaccatcatgtttaacacatagatctc 390  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  3619679 accatcataaccaccaccaccaccatgtttaacacctagatctc 3619636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 26611331 - 26611284
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaag 26611284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 47377646 - 47377579
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagatt 215  Q
    |||| |||||||||||||||||   |||| ||||||||||||||||||  | ||||| ||||||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatt 47377579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 53290078 - 53290035
Alignment:
Q  347 accattataaccaccaccaccatcatgtttaacacatagatctc 390  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  53290078 accatcataaccaccaccaccaccatgtttaacacctagatctc 53290035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 3847887 - 3847933
Alignment:
Q  149 gtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||||||||||||||||||   | |||||||||||||||||||||    
T  3847887 gtggcatttaatttgggaaaggagacttttttcccaccatgggaaag 3847933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 36865768 - 36865718
Alignment:
Q  145 gatggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  36865768 gatggtgacatttaatttgggaaaggagagttctttcccaccatgggaaag 36865718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 1014054 - 1013977
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaa 225  Q
    |||| ||||||||||||| |||   |||| ||||||||||||||||||  || || |||||||||||| ||| |||||    
T  1014054 ggtgacatttaatttgggtaagtgaagttgtttcccaccatgggaaagttagattaaaccattagatttaatcaagaa 1013977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 12590244 - 12590179
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    |||||||||||||||  ||||||||| ||||||||||||||  || |||  |||||||||||||||    
T  12590244 tttaatttgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaat 12590179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 23383335 - 23383416
Alignment:
Q  173 agttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 254  Q
    |||| ||||||||||||||||||  | ||| | ||||| ||| |||||||||| | | || ||||||||||| |||||||||    
T  23383335 agttgtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcatactccatcaatacta 23383416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 48091181 - 48091104
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaa 225  Q
    |||||||||| || |||||||| ||| | |||||||||||||||||||   | |||||  |||||||||| |||||||    
T  48091181 ggtggcatttcatatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtgaagaa 48091104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 38014963 - 38014923
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||||||||||||  |||||||| |||||||||||||||    
T  38014963 tttaatttgggaaaggctagtttttccccaccatgggaaag 38014923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 55864923 - 55864875
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||||||||||||  |||||  ||||||||||||||||||| |||||    
T  55864923 ggtggcatttaatttaagaaaggctagttttttcccaccatggaaaagc 55864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 10607406 - 10607520
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatac 252  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  10607406 catttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaaaatatagtcatatcatactccctcaatac 10607505  T
Q  253 tatattgttctccct 267  Q
    |||||||||||||||    
T  10607506 tatattgttctccct 10607520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 931699 - 931593
Alignment:
Q  338 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 437  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  931699 tccaacagtaccattctaaccaccaccaccatcatgtttaacacatagatctccttcactctttctacattttgtgataatttgattatttgatcaaaga 931600  T
Q  438 ttgatat 444  Q
    |||||||    
T  931599 ttgatat 931593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 931891 - 931770
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatg--aagaatagagtcatatcatactccc 245  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| |||||||||||||||||    
T  931891 ggtggcatttaatttagaaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaaaaaatacagtcatatcatactccc 931792  T
Q  246 tcaatactatattgttctccct 267  Q
    ||||||||||| |||| |||||    
T  931791 tcaatactatactgttatccct 931770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 338 - 444
Target Start/End: Original strand, 10607591 - 10607698
Alignment:
Q  338 tccaagagtaccattataaccaccaccaccatcatgttt-aacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaag 436  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  10607591 tccaagagtaccattataaccaccactaccatcatgttttaacacatagatctccctcaccctttctacattttgtgataattatattatttgatcaaag 10607690  T
Q  437 attgatat 444  Q
    ||||||||    
T  10607691 attgatat 10607698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 29997645 - 29997693
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29997645 ggtggcatttaatttgggaaagattagtttttttccaccatgggaaagc 29997693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 4826396 - 4826446
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  4826396 atggtggcatttaatttgggaaagactagttatttcccaccacgggaaagc 4826446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 930930 - 930969
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaa 194  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  930930 tttaatttgggaaagactagttttttcccaccatgggaaa 930969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 24125972 - 24126039
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagatt 215  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||  | ||||| ||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatt 24126039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 1034728 - 1034793
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    ||||||||||||||| ||||||||| |||||||| ||||||  || ||| ||||||||||||||||    
T  1034728 tttaatttgggaaaggttagtttttccccaccataggaaagttagtttttaaccattagattaaat 1034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 29998223 - 29998175
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  29998223 ggtggcatttaatttggaaaaggttagtttttttccatcatgggaaagc 29998175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 3543111 - 3543064
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 3543064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 7159389 - 7159322
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagatt 215  Q
    |||| |||||||||||||||||   | |||||||||| |||||||||| || | ||||||||||||||    
T  7159389 ggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagtaaatctcaaccattagatt 7159322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 3542819 - 3542861
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||||||||||||||   |||||||||||||||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaag 3542861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 10608361 - 10608296
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    |||||||||||||||  | ||||||||||||||||||||||  || |||  |||||||||||||||    
T  10608361 tttaatttgggaaaggctggttttttcccaccatgggaaagttagtttttgaccattagattaaat 10608296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 24126768 - 24126719
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||||||||||||||||||||||   |||| ||||||| ||||||||||    
T  24126768 atggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaag 24126719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 33480678 - 33480629
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  33480678 atggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 33480629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 26226603 - 26226643
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccat 188  Q
    ||||| |||||||||||||||| |||||||||| |||||||    
T  26226603 ggtggtatttaatttgggaaaggttagtttttttccaccat 26226643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 33741468 - 33741340
Alignment:
Q  17 aaagggtgttgttgtttttggaaaatggtggcacaatttttggatcat-ttgcagtagagtattatgtcatctgtgatagtgaagatgtctgtgaaaacg 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||||  |    
T  33741468 aaagggttttgttgtttttggaaaatggtggcacaatttttggatcatgttgcagtcgagtattatgtcatccgtgatagtgaagatgtttgtgaaagtg 33741369  T
Q  116 aaaatgcttaggaccgctttgccaatcatgat 147  Q
    ||||   ||||||||||||| |||||||||||    
T  33741368 aaaa---ttaggaccgctttaccaatcatgat 33741340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 45064686 - 45064805
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||  ||| ||||||| | || ||||||||||||||    
T  45064686 ggtgccatttaatttgggaaagattagttttttcccatcatgggaaagtaagttttaaccattagatctaattaagaatatactcttatcatactccctc 45064785  T
Q  248 aatactatattgttctccct 267  Q
    || |||  ||| ||||||||    
T  45064786 aacactcaatttttctccct 45064805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 49610704 - 49610825
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccc 245  Q
    |||||| ||||| ||||||||||||  | ||||||||| ||||||||||| |||||| |||| |||||||||||| | || | | || |||||| |||||    
T  49610704 atggtgccattttatttgggaaagaagacttttttccctccatgggaaagtaagttttaacctttagattaaatggataacatactcttatcatgctccc 49610803  T
Q  246 tcaatactatattgttctccct 267  Q
    ||||||||| ||| ||||||||    
T  49610804 tcaatactagatttttctccct 49610825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 8561784 - 8561736
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  8561784 ggtgacatttaatttgggaaagactagttttttcccatcatgggaaagc 8561736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 43737726 - 43737776
Alignment:
Q  145 gatggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  43737726 gatggtgccatttaatttgggaaagtagagttatttcccaccatgggaaag 43737776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 4640558 - 4640599
Alignment:
Q  178 tttcccaccatgggaaagcaagtttcaaccattagattaaat 219  Q
    |||||||||||||||||| || ||||||||||||||| ||||    
T  4640558 tttcccaccatgggaaagtaattttcaaccattagatcaaat 4640599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 49611603 - 49611562
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaa 194  Q
    |||||||||||||||||  ||||||||||||| |||||||||    
T  49611603 catttaatttgggaaaggctagttttttcccatcatgggaaa 49611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 16971083 - 16970962
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccc 245  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||  ||||||||||| | || ||||||||||||    
T  16971083 atggtgccatttaatttgggaaagactagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccc 16970984  T
Q  246 tcaatactatattgttctccct 267  Q
    |||| |||  ||| ||||||||    
T  16970983 tcaacactcaatttttctccct 16970962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 16970882 - 16970806
Alignment:
Q  344 agtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 420  Q
    |||||||| |||||||||||||||| ||| |||||||| ||||||||||||||| | |||| |||||||||||||||    
T  16970882 agtaccatcataaccaccaccaccaccatatttaacacctagatctccctcactttctctatattttgtgataattt 16970806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 8226642 - 8226761
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    |||| ||||||||||| ||||||  | ||||||||| |||||| |||| || ||| |||| |||||||||||| |||| | | || |||||| |||||||    
T  8226642 ggtgccatttaatttgagaaagaagaattttttccctccatggaaaagtaaattttaacctttagattaaatggagaacatactcttatcatgctccctc 8226741  T
Q  248 aatactatattgttctccct 267  Q
    ||||||||||| ||||||||    
T  8226742 aatactatatttttctccct 8226761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 2319266 - 2319314
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  2319266 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagc 2319314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 26268344 - 26268392
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  26268344 ggtggcatttaatttgggaaatgttagttttttcccaccatgggaaagc 26268392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 26269069 - 26269021
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  26269069 ggtggcatttaatttgggaaaggttagttttttcccatcatgggaaagc 26269021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 2320015 - 2319967
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  2320015 ggtggcatttaatttgggaaaggctagttttttcccaccataggaaagc 2319967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 33284071 - 33284024
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  33284071 ggtgccatttaatttgggaaaggttagttttatcccaccatgggaaag 33284024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 33283170 - 33283212
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||    
T  33283170 catttaatttgggaaaggttagttttatcccatcatgggaaag 33283212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 39166591 - 39166637
Alignment:
Q  150 tggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||| | |||||||||||||| |||| |||||    
T  39166591 tggcatttaatttgggaaaaactagttttttcccactatggaaaagc 39166637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 7625467 - 7625536
Alignment:
Q  142 catgatggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccatta 211  Q
    |||||||||| |||||||||||||||||   | || ||||||| |||||||||| || | ||||||||||    
T  7625467 catgatggtgtcatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccatta 7625536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 39950402 - 39950451
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  39950402 atggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 16427335 - 16427216
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 247  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||  ||||||||||| | || ||||||||||||||    
T  16427335 ggtgtcatttaatttgggaaagattagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctc 16427236  T
Q  248 aatactatattgttctccct 267  Q
    || |||  ||| ||||||||    
T  16427235 aacactcaatttttctccct 16427216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 41984727 - 41984775
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  41984727 ggtggcatttaatttgggaaaggctagttttttctcaccatgggaaagc 41984775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 40992222 - 40992294
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||||  || ||| ||||||| ||||||||    
T  40992222 ggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagttagtttttaaccatttgattaaat 40992294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 41043376 - 41043328
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| |||||    
T  41043376 ggtggcatttaatttgggaaaggctagttttttcccatcatggaaaagc 41043328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 14573261 - 14573308
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 14573308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 16426551 - 16426600
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||| |||||||||||||||||  | ||||||||||||||||| ||||    
T  16426551 atggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaag 16426600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 36390982 - 36391030
Alignment:
Q  173 agttttttcccaccatgggaaagcaagtttcaaccattagattaaatga 221  Q
    |||| |||||||||||||||||| || ||| ||||||||||| ||||||    
T  36390982 agttgtttcccaccatgggaaagtaaattttaaccattagatcaaatga 36391030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 267
Target Start/End: Complemental strand, 29315353 - 29315240
Alignment:
Q  154 atttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatact 253  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||  ||||||||||| | || |||||||||||||||| |||    
T  29315353 atttaatttgggaaagactagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccctcaacact 29315254  T
Q  254 atattgttctccct 267  Q
      ||| ||||||||    
T  29315253 caatttttctccct 29315240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 41224315 - 41224391
Alignment:
Q  344 agtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 420  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  41224315 agtaccatcataaccaccaccaccaccatgtttaacacctagatctccctcactttctctatattttgtgatgattt 41224391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 41224114 - 41224201
Alignment:
Q  153 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcata 240  Q
    |||| ||||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||||  ||||||||||| | || |||||||    
T  41224114 cattaaatttgggaaagactagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcata 41224201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 48259243 - 48259294
Alignment:
Q  145 gatggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  48259243 gatggtggcatttaatttgggaaagactagttttttcccaccataggaaagc 48259294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 45888028 - 45887980
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  45888028 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagc 45887980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 46757425 - 46757377
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  46757425 ggtggcatttaatttgggaaagactagtttttccccaccatgggaaagc 46757377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 29315156 - 29315083
Alignment:
Q  344 agtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 420  Q
    |||||||| |||||||||||||||||   ||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  29315156 agtaccatcataaccaccaccaccat---gtttaacacctagatctccctcactttctctatattttgtgatgattt 29315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 47332007 - 47331953
Alignment:
Q  142 catgatggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    ||||| |||| |||||||||||||||||  |||||||||||||||||||||||||    
T  47332007 catgaaggtgacatttaatttgggaaaggctagttttttcccaccatgggaaagc 47331953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 44896053 - 44896118
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    |||||||||||||||| |||||||| |||||||||||||||  || ||| ||||||||||||||||    
T  44896053 tttaatttgggaaagactagtttttccccaccatgggaaagttagtttttaaccattagattaaat 44896118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 48259865 - 48259820
Alignment:
Q  149 gtggcatttaatttgggaaagattagttttttcccaccatgggaaa 194  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  48259865 gtggcatttaatttgggaaatgttagttttttcccaccatgggaaa 48259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 24322400 - 24322352
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  24322400 tggtgccatttaatttgggaaaggttagttttatcccaccatgggaaag 24322352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 45887279 - 45887327
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||    
T  45887279 ggtggcgtttaatttgggaaaggctagttttttcccaccatgggaaagc 45887327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 29006347 - 29006418
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaa 218  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||||  || ||| |||||||||||||||    
T  29006347 ggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaa 29006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 29007247 - 29007176
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaa 218  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||||  || ||| |||||||||||||||    
T  29007247 ggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaa 29007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 4984809 - 4984856
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  4984809 ggtggcatttaatttgggaaaggttagtttttt-ccaccatggaaaagc 4984856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 4985442 - 4985394
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||||    
T  4985442 ggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagc 4985394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 4989540 - 4989492
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 196  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||||    
T  4989540 ggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagc 4989492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 30915756 - 30915844
Alignment:
Q  170 attagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatatt 258  Q
    ||||||| |||||||||||||||||| || ||| | ||||||||| |||||||||  | | |  |||||||||| ||||| ||||||||    
T  30915756 attagttgtttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 30915844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 44909400 - 44909360
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  44909400 tttaatttgggaaaggtaagttttttcccaccatgggaaag 44909360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 20890206 - 20890246
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||||||||||||   |||||||||||||||||||||||    
T  20890206 tttaatttgggaaaggacagttttttcccaccatgggaaag 20890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 41224891 - 41224819
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    |||| |||||||||||||||||  |  |||||||||||||||||||||  || ||| ||||||| ||||||||    
T  41224891 ggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagttagtttttaaccatttgattaaat 41224819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 41533903 - 41533943
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||||||||||||| | |||||||| ||||||||||||||    
T  41533903 tttaatttgggaaaggtaagtttttttccaccatgggaaag 41533943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 47331260 - 47331304
Alignment:
Q  152 gcatttaatttgggaaa-gattagttttttcccaccatgggaaag 195  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||    
T  47331260 gcatttaatttgggaaaaggttagttttttcccaccatgagaaag 47331304  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 30272997 - 30272885
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 254  Q
    |||||||||||||||   | |||||||||| |||||||||| |||||| |||||||||||| ||||||||||| | |  |||||||||||||||||||||    
T  30272997 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactccctcaatacta 30272898  T
Q  255 tattgttctccct 267  Q
     ||| ||||||||    
T  30272897 gatttttctccct 30272885  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 36936738 - 36936626
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 254  Q
    |||||||||||||||   | |||||||||| |||||||||| || ||| |||||||||||| ||| ||||||| | |  |||||||||||||||||||||    
T  36936738 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacacttttatcatactccctcaatacta 36936639  T
Q  255 tattgttctccct 267  Q
     ||| ||||||||    
T  36936638 gatttttctccct 36936626  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 36936459 - 36936347
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 254  Q
    |||||||||||||||   | |||||||||| |||||||||| || ||| |||||||||||| ||| ||||||| | |  ||||||||||||| |||||||    
T  36936459 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacacttttatcatactcccttaatacta 36936360  T
Q  255 tattgttctccct 267  Q
     ||| ||||||||    
T  36936359 gatttttctccct 36936347  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 41348151 - 41348216
Alignment:
Q  155 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    ||||||||||||||| ||||||||| |||||||||||||||  || ||| ||||||||||||||||    
T  41348151 tttaatttgggaaaggttagtttttccccaccatgggaaagttagtttttaaccattagattaaat 41348216  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 43924490 - 43924561
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaat 219  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||| | |||  ||| |||||||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaat 43924561  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 41092813 - 41092732
Alignment:
Q  186 catgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatattgttctccct 267  Q
    |||||||||| |||||| |||||||||||  ||||||||||| | |  |||||||||||||||| |||  ||| ||||||||    
T  41092813 catgggaaagtaagttttaaccattagatctaatgaagaatacacttttatcatactccctcaacactcaatttttctccct 41092732  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 25876521 - 25876568
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||| ||||||||||||||||||  | |||||||||||||||||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaag 25876568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 30272807 - 30272764
Alignment:
Q  347 accattataaccaccaccaccatcatgtttaacacatagatctc 390  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  30272807 accatcataaccaccaccaccaccatgtttaacacctagatctc 30272764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 34992312 - 34992265
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 34992265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 36936269 - 36936226
Alignment:
Q  347 accattataaccaccaccaccatcatgtttaacacatagatctc 390  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  36936269 accatcataaccaccaccaccaccatgtttaacacctagatctc 36936226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 36936548 - 36936505
Alignment:
Q  347 accattataaccaccaccaccatcatgtttaacacatagatctc 390  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  36936548 accatcataaccaccaccaccaccatgtttaacacctagatctc 36936505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 41092632 - 41092577
Alignment:
Q  365 accatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 420  Q
    |||| |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  41092632 accaccatgtttaacacctagatctccctcactttctctatattttgtgatgattt 41092577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 41092171 - 41092244
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 219  Q
    ||||| |||||||||||||||||  | ||||||||||||||||| ||||  || ||| ||||||| ||||||||    
T  41092171 tggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttagtttttaaccatttgattaaat 41092244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 1365828 - 1365876
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||||||||||||||||||||   | || ||||||||||||||||||    
T  1365828 tggtggcatttaatttgggaaaggagacttctttcccaccatgggaaag 1365876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40451009 - 40450961
Alignment:
Q  173 agttttttcccaccatgggaaagcaagtttcaaccattagattaaatga 221  Q
    |||| |||||||||||||||||| || ||| ||||||||||| ||||||    
T  40451009 agttgtttcccaccatgggaaagtaaattttaaccattagatcaaatga 40450961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 46740595 - 46740512
Alignment:
Q  166 aaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaa 249  Q
    ||||| |||||||||||||||||||||||| |||||| || |||| ||||||||||| || | | || ||||||||||||||||    
T  46740595 aaagactagttttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaa 46740512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 46722008 - 46721887
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccc 245  Q
    |||||| ||||||||||||||||||  | |||||| || | ||||||||| |||||| |||| ||| |||||||| |||| | | |  |||||| |||||    
T  46722008 atggtgtcatttaatttgggaaagaagactttttttcctctatgggaaagtaagttttaacctttaaattaaatggagaacatacttttatcatgctccc 46721909  T
Q  246 tcaatactatattgttctccct 267  Q
    ||||||||| ||| ||||||||    
T  46721908 tcaatactagatttttctccct 46721887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 38742223 - 38742103
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccct 246  Q
    ||||| |||||||| |||||||||  | ||||||||| | |||| |||| |||||| |||| |||||| ||||| |||| | | || |||||| ||||||    
T  38742223 tggtgccatttaatctgggaaagaagacttttttccctcaatggaaaagtaagttttaacctttagatcaaatggagaacatactcttatcatgctccct 38742124  T
Q  247 caatactatattgttctccct 267  Q
    |||||||| ||| ||||||||    
T  38742123 caatactagatttttctccct 38742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 444
Target Start/End: Complemental strand, 38742028 - 38741930
Alignment:
Q  347 accattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgatt-attcgatcaaagattgatat 444  Q
    ||||| ||||||||||||| || |||||||||||  || |||||  ||||| | |||| |||||||||| |||||||| ||| ||||||| ||||||||    
T  38742028 accatcataaccaccaccatcaccatgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatat 38741930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 38336943 - 38337015
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaat 219  Q
    ||||||||||||||||||| |||   |||| ||||||||||||||||||| | |||  ||| |||||||||||    
T  38336943 tggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaat 38337015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 38337525 - 38337454
Alignment:
Q  148 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaat 219  Q
    |||||| |||||||||||||||   |||| ||||||||||||||||||| | |||  ||| |||||||||||    
T  38337525 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaat 38337454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 44407011 - 44406931
Alignment:
Q  144 tgatggtggcatttaatttgggaa-agattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaga 224  Q
    |||||||||||||||   |||||| |||| |||| |||||||||||||||||| || ||| | ||||||||| |||||||||    
T  44407011 tgatggtggcatttagcatgggaatagat-agttgtttcccaccatgggaaagtaaattttacccattagatcaaatgaaga 44406931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 45243037 - 45242988
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||| ||||||||||||||||||  |||| ||| ||||||||||||||    
T  45243037 atggtgccatttaatttgggaaagaagagttcttttccaccatgggaaag 45242988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 50305486 - 50305401
Alignment:
Q  178 tttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatattgttct 263  Q
    ||||||||||||| |||| || ||| |||||||||||| ||||||||  | | || ||||||||||| | || |||||||| ||||    
T  50305486 tttcccaccatggaaaagtaaattttaaccattagattgaatgaagagcatactcttatcatactccatgaacactatattattct 50305401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 22171 - 22261
Alignment:
Q  177 ttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatattgttctccct 267  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||| || | | || |||||||||||||||| | || ||| ||||||||    
T  22171 ttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaacattagatttttctccct 22261  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 17337 - 17386
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    |||||| |||||||||||| ||||  | ||||||||||||||||||||||    
T  17337 atggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaag 17386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 12182 - 12230
Alignment:
Q  146 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaa 194  Q
    |||||||| ||||||||||||||||  |||| |||||||||||| ||||    
T  12182 atggtggcgtttaatttgggaaagagaagttgtttcccaccatgagaaa 12230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 27624 - 27576
Alignment:
Q  147 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 195  Q
    ||||| |||||||||||| ||||   |||||||||||||||||||||||    
T  27624 tggtgccatttaatttggaaaaggagagttttttcccaccatgggaaag 27576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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