View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_high_13 (Length: 276)
Name: NF16979_high_13
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 47658048 - 47658318
Alignment:
| Q |
1 |
tttgtggagtttatgttgtggagaatatcagaaggtttgaaaaggggtgttaacaaggttcatgacgacgttgtagacaaaggaatgcaagttgttagat |
100 |
Q |
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| T |
47658048 |
tttgtggagtttatgttgtggagaatatcagaaggtttgaaaaggggtgttaacaaggttcatgacgacgttgtagacaaaggaatgcaagttgttagat |
47658147 |
T |
|
| Q |
101 |
atgtaggagctaagtcgtcggttattattaccttgtgtcttgctttatatttacatattttgggtggtagtaggattctagtggctgcttagcatgatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47658148 |
atgtaggagctaagtcgtcggttattattaccttgtgtcttgctttatatttacatattttgggtggtagtaggattctagtggctgcttagcatgatca |
47658247 |
T |
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| Q |
201 |
ttcatcctaccctcatacttgtaatgcagttggaatataatttgcagctagatttgatctttacacctatg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47658248 |
ttcatcctaccctcatacttgtaatgcagttggaatataatttgcagctagatttgatctttacacatatg |
47658318 |
T |
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