View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_high_2 (Length: 570)
Name: NF16979_high_2
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 553
Target Start/End: Original strand, 35547853 - 35548384
Alignment:
| Q |
14 |
ttctatatgaaatttgtgagagactaaaaataaatcgtacacgtttggttacgcggtgataagaatcgatcttgagtgaattaattatagataaaagtat |
113 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
35547853 |
ttctatataaaatttgtgagagactaaaaataaatcgtataagtttggttacgcggtgataagaatcgatcttaaatgaattaattatagataaaagtat |
35547952 |
T |
|
| Q |
114 |
aattgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaataataaatttaagactaaagtcaattataaaagccaaagtatacaa |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
35547953 |
aattgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaacaataaatttaagagtaaagtcaattataaaaaccaaaatatacaa |
35548052 |
T |
|
| Q |
214 |
attatatccttaagtaaaatcaattctacaaataaaaccatttctacaatctctaaagtcacttttgaccctccataattgaattcaattttgtttatag |
313 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35548053 |
attatatc-ttaagtaaaatcaattctacaaataaaaccatttctacaatctctaaagtcacttttgaccctccataattgaattcaattttgttta--g |
35548149 |
T |
|
| Q |
314 |
tcttatatttacagtatttcacaaaagttaaagtggaaaattaacgtttccattttccatattcataaccgtaaaatctagcaaagattaatgtcatagg |
413 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35548150 |
tcttatattta-----tttcacaaaagttaaagtggaaaattaacgtttccattttccatattcataaccgtaaaatctagcaaagattaatgtcatagg |
35548244 |
T |
|
| Q |
414 |
acccacttcaacctttcacactctaaaaagagagactaaaaacaaacataaaaatcaactcactagttcccactaaccatcatcactgccagcaacaacc |
513 |
Q |
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| T |
35548245 |
acccacttcaacctttcacactctaaaaagagagactaaaaacaaatataaaaatcaactcactagttcccactaaccatcatcactgccagcaacaacc |
35548344 |
T |
|
| Q |
514 |
tcaacaataacattaaactcaaacaaatccaacacaacat |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35548345 |
tcaacaataacattaaactcaaacaaatccaacacaacat |
35548384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 250
Target Start/End: Original strand, 32421897 - 32422031
Alignment:
| Q |
116 |
ttgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaataataaatttaagactaaagtcaattataaaagccaaagtatacaaat |
215 |
Q |
| |
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||||||| ||||| |||||| || |||||| |||| | |||||||||||| ||| |||||||| ||||| |||||| || |||||||| ||||||| |
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| T |
32421897 |
ttgaatgaaaagtgatttatgtttggatgtatttatgtaaaagtgaatttatcaatgaatttaaggctaaaatcaattgtagaagccaaatgctacaaat |
32421996 |
T |
|
| Q |
216 |
tatatccttaagtaaaatcaattctacaaataaaa |
250 |
Q |
| |
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| || | | ||| | |||||||||||||| ||||| |
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| T |
32421997 |
tgtagcttcaaggagaatcaattctacaagtaaaa |
32422031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 35544359 - 35544411
Alignment:
| Q |
502 |
ccagcaacaacctcaacaataacattaaa--ctcaaacaaatccaacacaaca |
552 |
Q |
| |
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| T |
35544359 |
ccagcaacaaccgcaacaacaacattaaactctcaaccaaatccaacacaaca |
35544411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 47733523 - 47733651
Alignment:
| Q |
72 |
ataagaatcgatcttgagtgaattaattatagataaaagtataattgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaataat |
171 |
Q |
| |
|
|||| ||| ||| ||||| ||||| ||||| ||||||||| || ||||||||||| | || |||| ||||||||| |||| | ||| | |||||||||| |
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| T |
47733523 |
ataaaaattgattttgagggaattgattatggataaaagt-tagttgaatgtaaaatgatatatattttgatgtatttatgtaaaattagatttaataat |
47733621 |
T |
|
| Q |
172 |
aaatttaagactaaagtcaattataaaagc |
201 |
Q |
| |
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||||||||| ||||| ||||||||| |||| |
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|
| T |
47733622 |
aaatttaaggctaaaatcaattatagaagc |
47733651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 7206401 - 7206313
Alignment:
| Q |
117 |
tgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaataataaatttaagactaaagtcaattataaaagccaaa |
205 |
Q |
| |
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|||||||||||| ||||||| || |||||| |||| | ||| | |||||| |||||||||||| ||||| |||||| || |||||||| |
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| T |
7206401 |
tgaatgtaaagtgatttatatttggatgtatttatgtaaaactagatttaacaataaatttaaggctaaaatcaattgtagaagccaaa |
7206313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 32112114 - 32111987
Alignment:
| Q |
116 |
ttgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaataataaatttaagactaaagtcaattataaaagccaaagtatacaaat |
215 |
Q |
| |
|
||||||| ||||| |||||| || ||| || |||| | |||||| |||||| ||| |||||||| ||||| |||||| ||||||||||| ||||||| |
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| T |
32112114 |
ttgaatgaaaagtaatttatgtttggatttatttatgtaaaagtggatttaacaatgaatttaagtctaaaatcaattctaaaagccaaaagctacaaat |
32112015 |
T |
|
| Q |
216 |
tatatccttaagtaaaatcaattctaca |
243 |
Q |
| |
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| || | | ||||| ||||||||||||| |
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| T |
32112014 |
tgtagcttcaagtagaatcaattctaca |
32111987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 3887438 - 3887502
Alignment:
| Q |
141 |
gatgtaattatattaaagtgaatttaataataaatttaagactaaagtcaattataaaagccaaa |
205 |
Q |
| |
|
|||||| |||| | |||||| ||||||||||||||||||| ||||| |||||| || |||||||| |
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|
| T |
3887438 |
gatgtatttatgtaaaagtggatttaataataaatttaaggctaaaatcaattgtagaagccaaa |
3887502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 47978350 - 47978462
Alignment:
| Q |
66 |
gcggtgataagaatcgatcttgagtgaattaattatagataaaagtataattgaatgtaaagttatttatactttgatgtaattatattaaagtgaattt |
165 |
Q |
| |
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||||||| |||||| || ||||||||||| ||| | | ||||||| | ||||||||||||| |||||| || |||||| |||| | ||||||||||| |
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| T |
47978350 |
gcggtgacaagaattcattttgagtgaattgattttgggtaaaagtg-agttgaatgtaaagtgatttatggttggatgtatttatgtcaaagtgaattt |
47978448 |
T |
|
| Q |
166 |
aataataaatttaa |
179 |
Q |
| |
|
|| | ||||||||| |
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|
| T |
47978449 |
aacactaaatttaa |
47978462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 35105279 - 35105150
Alignment:
| Q |
115 |
attgaatgtaaagttatttatactttgatgtaattatattaaagtgaatttaataataaatttaagactaaagtcaattataaaagccaaagtatacaaa |
214 |
Q |
| |
|
|||||||| ||||| |||||| || ||||| |||| | |||||| ||||| || |||||||| |||||||||||| || || ||||| |||||| |
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| T |
35105279 |
attgaatgaaaagtgatttatgtttggatgtttttatgtaaaagtggatttatcgatgaatttaaggctaaagtcaattgtagaaaccaaaaactacaaa |
35105180 |
T |
|
| Q |
215 |
ttatatccttaagtaaaatcaattctacaa |
244 |
Q |
| |
|
||||| | | ||||| |||||||||||||| |
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|
| T |
35105179 |
ttatagcttcaagtagaatcaattctacaa |
35105150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 9722313 - 9722357
Alignment:
| Q |
162 |
atttaataataaatttaagactaaagtcaattataaaagccaaag |
206 |
Q |
| |
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|||||||||||||||||||| |||| || ||| |||||||||||| |
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|
| T |
9722313 |
atttaataataaatttaagaataaaatcgattctaaaagccaaag |
9722357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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