View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_high_4 (Length: 419)
Name: NF16979_high_4
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_high_4 |
 | |
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| [»] scaffold0013 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 166158 - 165769
Alignment:
| Q |
18 |
aatacaatacttacttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
166158 |
aatacaatacttacttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtc |
166059 |
T |
|
| Q |
118 |
aaaattaaaccaggtagcacaaataaatcaaacatcaatgatcaaaagttgtgacaattaattgaatagtacttgcctgaagcgacagcaggatattgac |
217 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
166058 |
aaaattaaaccaagtagcacaaataaatcaaacatcaatgatcaaaagttgtgacaattaattgaatagtacttgcctgaagcgacagcaggatattgac |
165959 |
T |
|
| Q |
218 |
tgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtagacaacactggaacaacccataattttacctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165958 |
tgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtagacaacactggaacaacccataattttacctt |
165859 |
T |
|
| Q |
318 |
aattaacttataattcggcttgattgtgaaagcttagtatcaaattacattgtttatagcctatgttgttaattaccttcaatccttctg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165858 |
aattaacttataattcggcttgattgtgaaagcttagtatcaaattacattgtttatagcctatgttgttaattaccttcaatccttctg |
165769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 105363 - 105235
Alignment:
| Q |
172 |
caattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaa |
271 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105363 |
caataaatttaatagcacttgcctgaagcgacaacaagacattgaccgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaa |
105264 |
T |
|
| Q |
272 |
cattgataaatgtagacaacactggaaca |
300 |
Q |
| |
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|||||||||| ||||||||||||| |||| |
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|
| T |
105263 |
cattgataaaagtagacaacactgaaaca |
105235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 105604 - 105466
Alignment:
| Q |
24 |
atacttacttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaatt |
123 |
Q |
| |
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||||||||||||||||| | | |||||||||| |||||||| |||||||| ||||| |||||||||| || | ||| |||||| |||||||| |||| | |
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| T |
105604 |
atacttacttctaaccactcttgagctcctgcgggctcccatgctgccaaaccaccctttttactctgcaatcatt-aaaaatttagttgtgttaaaagt |
105506 |
T |
|
| Q |
124 |
aaaccaggtagcacaaataaatcaaacatcaatgatcaaa |
163 |
Q |
| |
|
| | ||||||||| ||||||||||||||| | |||||||| |
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|
| T |
105505 |
agatcaggtagcataaataaatcaaacataagtgatcaaa |
105466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 5720992 - 5721102
Alignment:
| Q |
184 |
tagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatg |
283 |
Q |
| |
|
|||||||||||||||| || | || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
5720992 |
tagtacttgcctgaagagaaaacaagatattgactgaatcatataacctttcaggttccattttttcccccacaatctctggaggcaacattgataaaag |
5721091 |
T |
|
| Q |
284 |
tagacaacact |
294 |
Q |
| |
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|||||||||| |
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|
| T |
5721092 |
cagacaacact |
5721102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 5688260 - 5688370
Alignment:
| Q |
184 |
tagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatg |
283 |
Q |
| |
|
|||||||||||||||| || | || ||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||| | |
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|
| T |
5688260 |
tagtacttgcctgaagagaaaacatgatattgacggaatcatataacctttcaggttccattttttcccctacaatctccggagacaacattgataaaag |
5688359 |
T |
|
| Q |
284 |
tagacaacact |
294 |
Q |
| |
|
|||||||||| |
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|
| T |
5688360 |
cagacaacact |
5688370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 5653926 - 5654039
Alignment:
| Q |
187 |
tacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtag |
286 |
Q |
| |
|
||||| ||||||| |||| || | ||||||||||||||||| |||||| ||||| | | ||||||||||||||| ||||||||||||||| ||| |||| |
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|
| T |
5653926 |
tactttcctgaagtgacaacacaaaattgactgaatcatatagcctttcgggttcaaccatttcccccacaatctttggaggcaacattgacaaaagtag |
5654025 |
T |
|
| Q |
287 |
acaacactggaaca |
300 |
Q |
| |
|
||||||||| |||| |
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|
| T |
5654026 |
acaacactgaaaca |
5654039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 5668475 - 5668582
Alignment:
| Q |
186 |
gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta |
285 |
Q |
| |
|
|||||||||||||| || | ||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| |||||| | | |
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|
| T |
5668475 |
gtacttgcctgaagagaaaataggatattgaccgcatcatataacctttcaggttccatctttt-ccccacaatctccggaggcagcatcgataaaagca |
5668573 |
T |
|
| Q |
286 |
gacaacact |
294 |
Q |
| |
|
||||||||| |
|
|
| T |
5668574 |
gacaacact |
5668582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 5653771 - 5653823
Alignment:
| Q |
17 |
aaatacaatacttacttctaaccattttggagctcctgctggctcccaagctg |
69 |
Q |
| |
|
||||| |||||||||||||||||||| | || |||||||||||||||| |||| |
|
|
| T |
5653771 |
aaatataatacttacttctaaccattcttgacctcctgctggctcccacgctg |
5653823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 12136454 - 12136568
Alignment:
| Q |
186 |
gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta |
285 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| ||| |
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|
| T |
12136454 |
gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttcccctacaatctttggaggcaacactgataaaagta |
12136553 |
T |
|
| Q |
286 |
gacaacactggaaca |
300 |
Q |
| |
|
| |||||||| |||| |
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|
| T |
12136554 |
ggcaacactgaaaca |
12136568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 12136279 - 12136351
Alignment:
| Q |
18 |
aatacaatacttacttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactct |
90 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
12136279 |
aatataatacttacttctaaccattctggagctcctgctggctcccatgctgctaaaccgccatttttactct |
12136351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 188 - 300
Target Start/End: Complemental strand, 13053861 - 13053749
Alignment:
| Q |
188 |
acttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtaga |
287 |
Q |
| |
|
|||| ||||||| |||| ||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |
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|
| T |
13053861 |
acttacctgaagtgacaacagaagattgactgaatcatataacctctctggttccatattttcacccacaatctcaggaggcaacattgataaaagtaga |
13053762 |
T |
|
| Q |
288 |
caacactggaaca |
300 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
13053761 |
caacactgaaaca |
13053749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 91396 - 91519
Alignment:
| Q |
177 |
aattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattg |
276 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
91396 |
aattgaacagtacatgcctgaagtgacaacaggagattgactgaatcatataacctttccggttccatcttttcccccacagttgctggaggaaacattg |
91495 |
T |
|
| Q |
277 |
ataaatgtagacaacactggaaca |
300 |
Q |
| |
|
|||| ||| ||||||||| |||| |
|
|
| T |
91496 |
ataatagtaaacaacactgaaaca |
91519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 91202 - 91269
Alignment:
| Q |
20 |
tacaatacttacttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttac |
87 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91202 |
tacaatacttacttctaaccattcttgacctcctgctggctcccaagctgccaatccaccatttttac |
91269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 91575 - 91639
Alignment:
| Q |
343 |
gtgaaagcttagtatcaaattacattgtttatagcctatgttgttaattaccttcaatccttctg |
407 |
Q |
| |
|
||||||||||| |||||||||| | || |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
91575 |
gtgaaagcttattatcaaattatgctattcatagcctatgttgttagttaccttcaaaccttctg |
91639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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