View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_high_6 (Length: 393)
Name: NF16979_high_6
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 26855905 - 26856257
Alignment:
| Q |
20 |
attagtatttgtgttggcactatgtttaagaaaatccatggacaaagaattggccacaatttcatcaatgggaatattagcagggtccataggaacaaca |
119 |
Q |
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| T |
26855905 |
attagtatttgtattggcactatgtttaagaaaatccatggacaaagaattagccacaatttcatcaatgggagtattagcagggtacataggaacaaca |
26856004 |
T |
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| Q |
120 |
gcatttcctgttctattttgtattctcaaagagcttaaccttataaactcagatgtcggacgacttgcattatcgaccgcattaatcggcgatgcatgtg |
219 |
Q |
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| T |
26856005 |
gcatttcctgttctattttgtattctcaaagagcttaaccttataaactcagatgtcggacgacttgcattatcgaccgcgttaatcggcgatgcatttg |
26856104 |
T |
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| Q |
220 |
gaattggcggtgttttagcatttgaagcaggaaaacaaggagaaataaaatcagataattctctgtggttcatgatttctgttgtagttgtggcaatact |
319 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26856105 |
gaattggtggtgttttagcatttgaagcgggaagacaaggagaaataaaatcagagaattctttgtggttcatgatttctgttgtagttgtggcaatact |
26856204 |
T |
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| Q |
320 |
tttattttgctgtattaggccaacaatgatgtggattaatagaaaaacaccag |
372 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26856205 |
tttactttgttgtattaggccaacaatgatgtggattaatagaaaaacaccag |
26856257 |
T |
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