View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16979_high_9 (Length: 337)

Name: NF16979_high_9
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16979_high_9
NF16979_high_9
[»] chr8 (6 HSPs)
chr8 (13-321)||(37533047-37533345)
chr8 (13-180)||(41762267-41762434)
chr8 (197-321)||(41762422-41762546)
chr8 (197-321)||(41761817-41761941)
chr8 (197-321)||(37532594-37532718)
chr8 (125-180)||(41761929-41761984)
[»] chr7 (8 HSPs)
chr7 (13-180)||(43754289-43754456)
chr7 (13-180)||(48880490-48880658)
chr7 (197-322)||(43754784-43754908)
chr7 (197-322)||(43754176-43754301)
chr7 (224-322)||(48880993-48881091)
chr7 (241-314)||(48880099-48880172)
chr7 (125-180)||(43754741-43754796)
chr7 (191-232)||(48880680-48880721)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 37533047 - 37533345
Alignment:
Q  13 aaaattcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  37533047 aaaattcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttaaaaaaagtgatagggtgaaagaattaatatacctaggaggata 37533146  T
Q  113 gttgcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgagatgnnnnnnnngaaagaatcatggatgagaggt 212  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||        ||||||||||||||||||||||    
T  37533147 gttgcagggtgaaagaattttgattggtgagtttggaagaa---------ttgttatcatggatgagatg-tttttttgaaagaatcatggatgagaggt 37533236  T
Q  213 tgaagacaactaaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtcctatgatgggaaatga 312  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  37533237 tgaagacaactaaaataatatagtgtagttaaactatagtaaaatcagtgttcctctttaatctcaccataaaaattaattgtcctatggtgggaaagga 37533336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 41762267 - 41762434
Alignment:
Q  13 aaaattcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggata 112  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||       ||||| |||||||||||||||||||||||||||||||    
T  41762267 aaaattcaaatgggtttattgttttggtcgatgaaattgaaaaagaaggaattttttaaaaaagtgatggggtgaaagaattaatatacctaggaggata 41762366  T
Q  113 gttgcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41762367 gttgcagggtgaaagaattttgattggtgaggttggaagaattctttaggttgttatcatggatgaga 41762434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 197 - 321
Target Start/End: Original strand, 41762422 - 41762546
Alignment:
Q  197 atcatggatgagaggttgaagacaactaaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  41762422 atcatggatgagaggttgaagacaagtaaaataatatagtgtagttagactatagtaaaatcagtgttcctctttaatctcaccataaaaattaactgtc 41762521  T
Q  297 ctatgatgggaaatgattaaccttt 321  Q
    | ||| ||||||| |||||| ||||    
T  41762522 ccatggtgggaaaagattaaacttt 41762546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 41761941 - 41761817
Alignment:
Q  197 atcatggatgagaggttgaagacaactaaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  41761941 atcatggatgagaggttgaagacaagtaaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaactgtc 41761842  T
Q  297 ctatgatgggaaatgattaaccttt 321  Q
    | ||| ||||||| |||||||||||    
T  41761841 ccatggtgggaaaggattaaccttt 41761817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 37532718 - 37532594
Alignment:
Q  197 atcatggatgagaggttgaagacaactaaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||     
T  37532718 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtt 37532619  T
Q  297 ctatgatgggaaatgattaaccttt 321  Q
      ||| ||||||| |||||||||||    
T  37532618 tcatggtgggaaaggattaaccttt 37532594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 41761984 - 41761929
Alignment:
Q  125 aagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  41761984 aagaattttgattggtgaagttggaagaattctttgggttgttatcatggatgaga 41761929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 43754456 - 43754289
Alignment:
Q  13 aaaattcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggata 112  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||       ||||| |||||||||||||||||||||||||||||||    
T  43754456 aaaattcaaatgggtttattgttttggtcgatgaaattgaaaaagaaggaattttttaaaaaagtgatggggtgaaagaattaatatacctaggaggata 43754357  T
Q  113 gttgcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  43754356 gttgcagggtgaaagaattttgattggtgaggttggaagaattctttatgttgttatcatggatgaga 43754289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 48880490 - 48880658
Alignment:
Q  13 aaaattcaaatgggttcattg-ttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggat 111  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||       ||||| ||||||||||||||||||||||||||||||    
T  48880490 aaaattcaaatgggttcattggttttggtcgatgaaattgaaaaagaaggaatttttaaaaaaagtgatggggtgaaagaattaatatacctaggaggat 48880589  T
Q  112 agttgcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  48880590 agttgcaaggtgaaagaagtttgattgctgaggttggaaaaattctttaggttgttatcatggatgaga 48880658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 43754784 - 43754908
Alignment:
Q  197 atcatggatgagaggttgaagacaactaaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||    
T  43754784 atcatggatgagaggttgaagacaagtaaaataatatagtgtggttagactat-gtaagatcagtgttcctctttaatctcaccataaaaattaactgtc 43754882  T
Q  297 ctatgatgggaaatgattaacctttt 322  Q
    | ||| ||||||| ||||||||||||    
T  43754883 ccatggtgggaaaagattaacctttt 43754908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 43754301 - 43754176
Alignment:
Q  197 atcatggatgagaggttgaagacaactaaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  43754301 atcatggatgagaggttgaagacaagtaaaataatatagtatagttatactatagtaaaatcagtgttcctctttaatctcatcataaaaattaactgtc 43754202  T
Q  297 ctatgatgggaaatgattaacctttt 322  Q
    | ||| ||| ||| |||||| |||||    
T  43754201 ccatgctggaaaaagattaaactttt 43754176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 322
Target Start/End: Original strand, 48880993 - 48881091
Alignment:
Q  224 aaaataatatagtgtagttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtcctatgatgggaaatgattaacctttt 322  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||  ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  48880993 aaaataatatagtgtagttagattatagtaaaatcagtgttcctttttaattccaccataaaaattaactgtcctatggtgggaaaggattaacctttt 48881091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 48880172 - 48880099
Alignment:
Q  241 ttagactatagtaaaatcaatgttcctctttaatctcaccataaaaattaattgtcctatgatgggaaatgatt 314  Q
    |||| ||||| ||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||||    
T  48880172 ttagtctatattaagatcaatgttcctctttagtctcaccataaaaattaactgtcccatgatggaaaatgatt 48880099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 43754741 - 43754796
Alignment:
Q  125 aagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  43754741 aagaattttgattggtgaagttggaagaattctttgggttgttatcatggatgaga 43754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 48880680 - 48880721
Alignment:
Q  191 gaaagaatcatggatgagaggttgaagacaactaaaataata 232  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  48880680 gaaagaatcatggatgagaggttgaagacaagtaaaataata 48880721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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