View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_1 (Length: 594)
Name: NF16979_low_1
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 51223611 - 51224192
Alignment:
| Q |
1 |
ccatctcttttttctattcatatcttcttgatgtgccactgattctttagctttcaaatccatttgagcttttgcatatagatcaggatcaatatcttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223611 |
ccatctcttttttctattcatatcttcttgatgtgccactgattctttaactttcaaatccatttgagcttttgcatatagatcaggatcaatatcttcc |
51223710 |
T |
|
| Q |
101 |
accaccaccttcacactttctgttagctgcctaacactcttgctccaatgcaacttcaggttcttctcaacaccttgtactatcaccggaagtacttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223711 |
accaccaccttcacactttctgttagctgcctaacactcttgctccaatgcaacttcaggttcttctcaacaccttgtactatcaccggaagtacttcta |
51223810 |
T |
|
| Q |
201 |
ccgttcctgttgttgccattttgtagaactgctcgttgttccacacatacagtgccctctcagctacctgaaaccacatttatatgcatcatcataaaca |
300 |
Q |
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| T |
51223811 |
ccgttcctgttgttgccattttgtagaactgctcgttgttccacacatacagtgccctctcagctacctgaaaccacatttatatgcatcatcataaaca |
51223910 |
T |
|
| Q |
301 |
aatttcactgtcagtgtaaaaatatttttcacttgcatccaatcgcatcttatcattatgccaaacggttaatgttaattcctaaaatatctccacaatt |
400 |
Q |
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| T |
51223911 |
aatttcactgtcagtgtaaaaatatttttcacttgcatccaatcacatctcatcattatgccaaacggttaatgttaattcctaaaatatctccacaatt |
51224010 |
T |
|
| Q |
401 |
atctatgtgttgagatgtgatttgatgcatgctttttacaaatacagtgcatagcagttattctcatattttcatgagaaaacattttggaaactaaaaa |
500 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224011 |
atctatgtgttgagatgggatttgatgcatactttttacaaatacagtgcatatcagttattctcatattttcatgagaaaacattttggaaactaaaaa |
51224110 |
T |
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| Q |
501 |
gaga-nnnnnnnacctgagaattccaactgttgatgcattttgtaatctgagtacatataggcaaggccaactttcgatatt |
581 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224111 |
gagattttttttacctgagaattccaactgttgatgcattttgtaatctgagtacatataggcaaggccaactttcgatatt |
51224192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 5484970 - 5484917
Alignment:
| Q |
378 |
attcctaaaatatctccacaattatctatgtgttgagatgtgatttgatgcatg |
431 |
Q |
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||||||||||||||||||||| |||||| | |||||||||||| |||||||| |
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| T |
5484970 |
attcctaaaatatctccacaaatatctaaaaggtgagatgtgattggatgcatg |
5484917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 36224292 - 36224244
Alignment:
| Q |
372 |
atgttaattcctaaaatatctccacaattatctatgtgttgagatgtga |
420 |
Q |
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|||||| ||||| |||||||||| ||||||||||||| |||||||||| |
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| T |
36224292 |
atgttagttcctgaaatatctcctcaattatctatgtagtgagatgtga |
36224244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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