View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_11 (Length: 313)
Name: NF16979_low_11
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 36 - 309
Target Start/End: Original strand, 49729212 - 49729485
Alignment:
| Q |
36 |
ttgtgatcttagacaaactatgtggcccaggaaaactttgggatatgctttttctaactaccactttatagattttgatttgttgcggtcacaaatttca |
135 |
Q |
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| T |
49729212 |
ttgtgatcttagacaaactatgtggcccaggaaaactttgggatatgctttttctaactaccactttatagattttgatttgttgcggtcacaaatttca |
49729311 |
T |
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| Q |
136 |
tgcattcacgtagtcagaacattagttaaaagttcagaaactaagaagattttgatttttaaactctaaattaccgagcttgcaatctgaatcatccgat |
235 |
Q |
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| T |
49729312 |
tgcattcacgtagtcggaacatcagttaaaagttcagaaactaagaagattttgatttttaaactctaaattaccgagcttgcaatctgaatcatccgat |
49729411 |
T |
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| Q |
236 |
tgagggtcacaaaagtactaactgcgttgactgcatataatctgtgactgaagcaaattctaattcttctcact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49729412 |
tgagggtcacaaaagtactaactgcgttgactgcatataatctgtgactgaagcaaattctaattcttatcact |
49729485 |
T |
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