View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_12 (Length: 307)
Name: NF16979_low_12
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 2366734 - 2366448
Alignment:
| Q |
16 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366734 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
2366635 |
T |
|
| Q |
116 |
ttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttcctcgttgatcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366634 |
ttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttcctcgttgatcac |
2366535 |
T |
|
| Q |
216 |
attcgtag---gaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgcttcatctc |
299 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366534 |
attcgtaggatgaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgcttcatctc |
2366448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 2362127 - 2361850
Alignment:
| Q |
16 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
115 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2362127 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
2362028 |
T |
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| Q |
116 |
ttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttcctcgttgatcac |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| ||||||||||||| ||| |
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| T |
2362027 |
ttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccac |
2361928 |
T |
|
| Q |
216 |
attcgtaggaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgctt |
293 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
2361927 |
attcgtagcaccaaaatatcgtttcccaaccagcactggaagaacaatgttgaaacttaattgagtaaaccattgctt |
2361850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 2349793 - 2349606
Alignment:
| Q |
16 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
115 |
Q |
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||||||||||| ||||||| |||| | ||||||||||| | ||||| ||| |||||||| | | ||||||||||| ||| ||||||||||||||||||| |
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| T |
2349793 |
cttttatggcgatgctccttcaaccactcacctaaaatttcgtccatttccgtagaagtttcatccatggccttcatatgaccaccaaaatcaaaccatt |
2349694 |
T |
|
| Q |
116 |
ttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttc |
203 |
Q |
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||| ||||||| ||||||| | |||| ||||| |||||| |||| | || || |||||||| |||| |||||| ||||||| |
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| T |
2349693 |
ttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctccttcaaagctttcacacttctttgagcttcttc |
2349606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 2356406 - 2356317
Alignment:
| Q |
48 |
taaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagtaaaggaatggcatctcc |
137 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||| || ||||||||||||||||||||||||| || || ||||||| |||||||| |
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| T |
2356406 |
taaaatcatgtccaattccttagaagtttttttcatagctttcacatggccaccaaaatcaaaccgttctaaacaaggaatagcatctcc |
2356317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 2338750 - 2338656
Alignment:
| Q |
16 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaa |
110 |
Q |
| |
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||||||||||| |||||| |||| | ||| | |||||||||||||| || || |||||| ||||||||| |||||||| |||||||||||||| |
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| T |
2338750 |
cttttatggcgacgctccttcaaccactcatcaaaaatcttgtccaactccttggaagtttctttcatggtcttcacataaccaccaaaatcaaa |
2338656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 2306394 - 2306337
Alignment:
| Q |
51 |
aatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatca |
108 |
Q |
| |
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|||||| ||||| || || |||||| |||||||||||||||||| |||||||||||| |
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| T |
2306394 |
aatcttatccaactccttggaagtttctttcatggccttcacataaccaccaaaatca |
2306337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 4303882 - 4303615
Alignment:
| Q |
26 |
ggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagtaaagg |
125 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| | || | ||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
4303882 |
ggtgctcctccaacaaatcacctataatcttgtccatctctttggtagcttttttcatggccttcacatggcccccaaaatcaaaccattttaaaaaagg |
4303783 |
T |
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| Q |
126 |
aatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttcctcgttgatcacattcgtagga |
225 |
Q |
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|| |||||||| | |||||||||||| | |||| ||| || || ||||| ||||||||||||| ||| ||||||||| || ||| ||||| |||| | |
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| T |
4303782 |
aagagcatctcccactgtgaacacccccatcaaacgcagcatctcttttatagcttttacacatatttctacttcttccttgtcgataacatttgtagaa |
4303683 |
T |
|
| Q |
226 |
ccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgctt |
293 |
Q |
| |
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|| |||||| | || ||||||| || ||||||||| | | | | |||||||||| ||||||||||| |
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| T |
4303682 |
ccgaaatatcgctttccaaccaacaatggaagaaccaagtctatattcaattgagtaaaccattgctt |
4303615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 41342023 - 41341755
Alignment:
| Q |
28 |
tgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagtaaa-gga |
126 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
41342023 |
tgctccttcaacatatcacctaaaatcttgtccaattctttagaaaaaaatttcattgccttcacatggccaccaaaatcaaaccattttagaaaaggga |
41341924 |
T |
|
| Q |
127 |
atggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttcctcgttgatcacattcgtaggac |
226 |
Q |
| |
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| ||| | || | |||||||||||||||||| | | || || || |||||||| | |||| |||| ||||||||| || | ||||||||||| | |
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| T |
41341923 |
agagcaccacccaccgtgaacacccctaacaaacgtaacatctcttccaaagctttcatacatttttgttcttcttccttgtcaaccacattcgtagctc |
41341824 |
T |
|
| Q |
227 |
caaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgcttca |
295 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||| || |||||||||||| || ||||| |||| |
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|
| T |
41341823 |
caaaatatcgcttcccaaccaacattggaagaacaatgtttttactcaattgagtaaaacattgtttca |
41341755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 5805544 - 5805644
Alignment:
| Q |
16 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
115 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||| | |||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
5805544 |
cttttatggcggcgctcctttaacatctcacctaaaatttcatccaattccttagaagtttcattcatggcctttacatgaccaccaaaatcaaaccatt |
5805643 |
T |
|
| Q |
116 |
t |
116 |
Q |
| |
|
| |
|
|
| T |
5805644 |
t |
5805644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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