View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_3 (Length: 558)
Name: NF16979_low_3
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 237 - 543
Target Start/End: Complemental strand, 34243956 - 34243651
Alignment:
| Q |
237 |
ttgaatattcaataagagtgtaggagtcaacaagtcaaattttgattttgacacagtcaacaagtctaatnnnnnnnntacacacatattaatttattca |
336 |
Q |
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| T |
34243956 |
ttgaatattcgataagagtgtaggagtcaacaagtcaaatttttattttgacacagtcaacaagtctaataaaaaaa-tacacacatattaatttattca |
34243858 |
T |
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| Q |
337 |
tttctaataatctcaaattctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatcgctatttattaatttg |
436 |
Q |
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| T |
34243857 |
tttctaataatctcaaattctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatcgctatttattaatttg |
34243758 |
T |
|
| Q |
437 |
tttatatataacactgaaattaagactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatacta |
536 |
Q |
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| T |
34243757 |
tttatatataacactgaaattaagactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatacta |
34243658 |
T |
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| Q |
537 |
aatggtg |
543 |
Q |
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| T |
34243657 |
aatggtg |
34243651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 34244239 - 34244032
Alignment:
| Q |
13 |
aaaataacactattatgatcaaatttgcttaaaggtataattagaaaatgaaaaaatcaacctaaaatgaactcatttctttatatatagtatagatact |
112 |
Q |
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| T |
34244239 |
aaaataacactattatgattaaatttgcttaaaattataattagaagaagaaaaaatcaacctaaaatgaactcatttctttatatacagcatagatact |
34244140 |
T |
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| Q |
113 |
tcgctacaaaaattaaaattctcaataaacaaattgtcttgcactctttttaattacttcatgatttcaaata--tcttaacaaaagcaacatatcaagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
34244139 |
tcgctacaaaaattaaaattctcaataaacaaattgtcttgcactctttttaattacttcatgattccaaatatttcttaacaaaagcaacaaatcaagc |
34244040 |
T |
|
| Q |
211 |
tttgagtc |
218 |
Q |
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|||||||| |
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| T |
34244039 |
tttgagtc |
34244032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 355 - 543
Target Start/End: Complemental strand, 34260371 - 34260183
Alignment:
| Q |
355 |
tctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatcgctatttattaatttgtttatatataacactgaa |
454 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| || | |||||||||| | |||||||||||||| |
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| T |
34260371 |
tctcaattagccggcaaaagcaggcttagccggcagtgtaaaaagagtgaaagcatcaacttaatcactgataattaatttgtatttatataacactgaa |
34260272 |
T |
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| Q |
455 |
attaagactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatactaaatggtg |
543 |
Q |
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| T |
34260271 |
attaacactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatagtaaatggtg |
34260183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 31993242 - 31993195
Alignment:
| Q |
62 |
gaaaaaatcaacctaaaatgaactcatttctttatatatagtatagat |
109 |
Q |
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||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
31993242 |
gaaaaaatcaacccaaaatgatctactttctttatatatagtatagat |
31993195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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