View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_4 (Length: 488)
Name: NF16979_low_4
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 51223619 - 51223164
Alignment:
| Q |
1 |
aagagatgggaaagaattgaattggcagcttctaagaatcaatttgtcaatccacaacgatacatatgtgtttcccactgaatattaataatttaatgta |
100 |
Q |
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| T |
51223619 |
aagagatgggaaagaattgaattggcagcttctaagaatcaatttgtcaatccacaacgatacatatgtgtttcccactgaatattaataatttaatgta |
51223520 |
T |
|
| Q |
101 |
tgcaacatatatttcctgtcaattcaaccttcttaatcataagaaatgtttagaagctgaaatagatacttacacaagtatttataactaagcataaatt |
200 |
Q |
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| T |
51223519 |
tgcaacatatatttcctgtcaatccaaccttcttaatcataagaaatgtttagaagctgaaata----------------tttataactaagcataaatt |
51223436 |
T |
|
| Q |
201 |
caaataaataaatgataattaagttcttccaatgtttagagtgacaaatattgacatttaacaccatacagattctactgctatgaactatttttataag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223435 |
caaataaataaatgataattaagttcttccaatgtttagagtgacaaatattgacatttaacaccatacagattctactgctatgaactatttttataag |
51223336 |
T |
|
| Q |
301 |
tggtctactataaatcgatacttaaaaactctgaaactcaatttaacaattgaagcaacttttaaagccgaatttcatggtcttccttgccttcacattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51223335 |
tggtctactataaatcgatacttaaaaactctgaaactcaatttaacaattgaagcaacttttaaagctgaatttcatggtcttccttgccttcacattt |
51223236 |
T |
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| Q |
401 |
gaaaccaccacttacataaactttgctctgaacaatgttgaacacttatcgtcgcgtttaaatgcatatttt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223235 |
gaaaccaccacttacataaactttgctctgaacaatgttgaacacttatcgtcgcgtttaaatgcatatttt |
51223164 |
T |
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