View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_6 (Length: 415)
Name: NF16979_low_6
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 34771168 - 34770769
Alignment:
| Q |
1 |
gttacttctgagactctctaaagatgtattttcgttggcaatagtagttgaatttttagttattttttatcaattgattcaaacttcgttagctcttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771168 |
gttacttctgagactctctaaagatgtattttcgttggcaatagtagttgaatttttagttattttttatcaattgattcaaacttcgttagctcttttt |
34771069 |
T |
|
| Q |
101 |
attattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattgaatggaataaaatggattatatagtagaatgcattcca |
200 |
Q |
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| T |
34771068 |
attattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattgaatggaataaaatggattatatagtagaatgcattcca |
34770969 |
T |
|
| Q |
201 |
tcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaattactattttatccctgatcttttatttgaaaaagtagt |
300 |
Q |
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| T |
34770968 |
tcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaattactattttatccctgatcttttatttgaaaaagtagt |
34770869 |
T |
|
| Q |
301 |
gtgttcttttctcgacaggcctcacctacgttattctccacagttgtcattatcatcttgcttattctatttctgttttgttcagcatgtttcttctgtg |
400 |
Q |
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| T |
34770868 |
gtgttcttttctcgacaggcctcacctacgttattctccacagttgtcattatcatcttgcttattctatttctgttttgttcagcatgtttcttttgtg |
34770769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 150 - 354
Target Start/End: Complemental strand, 34781365 - 34781161
Alignment:
| Q |
150 |
tttgtaaaaattgaatggaataaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatc |
249 |
Q |
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| T |
34781365 |
tttgtaaaaattgaatggaataaaatggattataa--tataatgcatttcatcgtataccatcatctcttattatttttctttcctcca--tgaaacatc |
34781270 |
T |
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| Q |
250 |
ttaattttgtaattactattttatccctgatctttt-atttgaaaaagtagtgtgttcttttctcgacaggcctcacctacgtta---ttctccacagtt |
345 |
Q |
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|||||||| ||||||||||||||| || ||||||| ||||||| ||||||||||| ||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
34781269 |
ttaattttaaaattactattttatctctaatctttttatttgaacaagtagtgtgtccttttctcgacaggcttcatttacgttattcttctccacagtt |
34781170 |
T |
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| Q |
346 |
gtcattatc |
354 |
Q |
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| T |
34781169 |
gtcattatc |
34781161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 11549556 - 11549487
Alignment:
| Q |
246 |
catcttaattttgtaattactattttatccctgatcttttatttgaaaaagtagtgtgttcttttctcga |
315 |
Q |
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| T |
11549556 |
catcttaattttgtaattactattctatccctgatcttttatttgaaaaagtagtgtgtccttttctcga |
11549487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 11549485 - 11549427
Alignment:
| Q |
342 |
agttgtcattatcatcttgcttattctatttctgttttgttcagcatgtttcttctgtg |
400 |
Q |
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| T |
11549485 |
agttgtcattatcatcttgcttattctatttctgttttgttcaccatgtttcttttgtg |
11549427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 34795353 - 34795285
Alignment:
| Q |
46 |
agttgaatttttagttattttttatcaattgattcaaacttcgttagctctttttattattgttattat |
114 |
Q |
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|||| ||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
34795353 |
agttaaattttttgttattttttatcaattgagtcaaacttcgttggctctatttattattgttattat |
34795285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 34780570 - 34780505
Alignment:
| Q |
46 |
agttgaatttttagttattttttatcaattgattcaaacttcgttagctctttttattattgttatt |
112 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||| || |||||||||| |||||||| |
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| T |
34780570 |
agttgaatttttagttattttttatcaattgagtcgaacttcg-taattctttttatttttgttatt |
34780505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 34777720 - 34777675
Alignment:
| Q |
156 |
aaaattgaatggaataaaatggattatatagtagaatgcattccatca |
203 |
Q |
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| T |
34777720 |
aaaattgaatggaataaaatggat--gatagtagaatggattccatca |
34777675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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