View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16979_low_9 (Length: 366)
Name: NF16979_low_9
Description: NF16979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16979_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 157 - 360
Target Start/End: Complemental strand, 14330709 - 14330507
Alignment:
| Q |
157 |
atatataatttttactatctttacnnnnnnntatttatatctttgtaatcccctttcatttgggattgagtttaggaatgaaacatagaagtaatattat |
256 |
Q |
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| T |
14330709 |
atatatattttttactatctttacaaaaaa-tatttatatctttgtaatcccctttcatttgggattgagtttaggaatgaaacatagaagtaatattat |
14330611 |
T |
|
| Q |
257 |
atagttataacatttaatttgctagagcttgaactttagataatttttgaagttatgatttgccatgtatcattaacagtcactataatcttattgatga |
356 |
Q |
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| T |
14330610 |
atagttataacatttaatttgctagagcttgaactttagataattgttgaagttatgatttgccatgtataattaacagtcactataatcttattgatga |
14330511 |
T |
|
| Q |
357 |
tgtc |
360 |
Q |
| |
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|||| |
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| T |
14330510 |
tgtc |
14330507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 157 - 360
Target Start/End: Complemental strand, 14423719 - 14423517
Alignment:
| Q |
157 |
atatataatttttactatctttacnnnnnnntatttatatctttgtaatcccctttcatttgggattgagtttaggaatgaaacatagaagtaatattat |
256 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14423719 |
atatatattttttactatctttacaaaaaa-tatttatatctttgtaatcccctttcatttgggattgagtttaggaatgaaacatagaagtaatattat |
14423621 |
T |
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| Q |
257 |
atagttataacatttaatttgctagagcttgaactttagataatttttgaagttatgatttgccatgtatcattaacagtcactataatcttattgatga |
356 |
Q |
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| T |
14423620 |
atagttataacatttaatttgctagagcttgaactttagataattgttgaagttatgatttgccatgtataattaacagtcactataatcttattgatga |
14423521 |
T |
|
| Q |
357 |
tgtc |
360 |
Q |
| |
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|||| |
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| T |
14423520 |
tgtc |
14423517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 14330879 - 14330727
Alignment:
| Q |
16 |
caaggagtactcaaggcagaggtttaagcaataccacttaaagaagcctactttattggcataattgcttcttatgtgtttcttagtaaagttta----g |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14330879 |
caaggagtactcaaggcagaggtttaagcaataccacttaaagaagcctactttattggcataattgcttcttatgtgtttcttagtaaagtttagtttg |
14330780 |
T |
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| Q |
112 |
tattattaatgatgatataaagaggcatgagtatatatgtaaataatatataa |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14330779 |
tattattaatgatgatataaagaggcatgagtatatatgtaaataatatataa |
14330727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 14423889 - 14423737
Alignment:
| Q |
16 |
caaggagtactcaaggcagaggtttaagcaataccacttaaagaagcctactttattggcataattgcttcttatgtgtttcttagtaaagttta----g |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14423889 |
caaggagtactcaaggcagaggtttaagcaataccacttaaagaagcctactttattggcataattgcttcttatgtgtttcttagtaaagtttagtttg |
14423790 |
T |
|
| Q |
112 |
tattattaatgatgatataaagaggcatgagtatatatgtaaataatatataa |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14423789 |
tattattaatgatgatataaagaggcatgagtatatatgtaaataatatataa |
14423737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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