View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1697_high_6 (Length: 238)
Name: NF1697_high_6
Description: NF1697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1697_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 2575174 - 2574968
Alignment:
| Q |
18 |
ttttccacaagtaaacatatgagctcattgataaagaacacgactcatgtgatttccttttataacaacatgtaataacaactcatagaagtgagattat |
117 |
Q |
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| T |
2575174 |
ttttccacaagtaaacatatgagctcattgataaagaacacgactcatgtaatttccttttataacaaaatgtaataacaagtcatagaagtgagattat |
2575075 |
T |
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| Q |
118 |
aacttttaataacgacaattgtaaagtcctttgaagtatgaacttaatgttccatacaaattatttaactagttcacttgtaataactttagacgtgata |
217 |
Q |
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| T |
2575074 |
aacttttaataacgacaatagtaaagtcctttgaagtatgaacttaatgttccatacaaattatttaactagttcacttgtcataactttagacgtgata |
2574975 |
T |
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| Q |
218 |
ttttctt |
224 |
Q |
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||||||| |
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| T |
2574974 |
ttttctt |
2574968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 2565136 - 2565054
Alignment:
| Q |
142 |
agtcctttgaagtatgaacttaatgttccatacaaattatttaactagttcacttgtaataactttagacgtgatattttctt |
224 |
Q |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| || ||| |||||||| |
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| T |
2565136 |
agtcttttgaagtatgaacctaatgttcctaacaaattatttaactagttcacttgtaataattttacacatgagattttctt |
2565054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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