View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1697_low_2 (Length: 550)
Name: NF1697_low_2
Description: NF1697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1697_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 5 - 534
Target Start/End: Original strand, 26403736 - 26404269
Alignment:
| Q |
5 |
taagaaaaatgtaaaccaaaatacctcggttatttatttcgtataaatgatcaatagaacaatatatttgagttttacatcctttgtcttctcttgtttt |
104 |
Q |
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| T |
26403736 |
taagaaaaatgtaaacaaaaatacctcggttatttatttcgtatacataattagtagaacaatatatttgagttttacatcttttgtcttctcttgtttt |
26403835 |
T |
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| Q |
105 |
tagaatcctaacaaattgagttgctgctcnnnnnnnnnnnncaagaaaactcgacta--tatagcatatttgtaacatatagaaaaatctttccaggttc |
202 |
Q |
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| T |
26403836 |
tagaatcctagcaaattgagtttctgtacaaaaataaaaaacaagaaaactcgactaaatataccatatttggaacatataaaaaaatctttccaggttc |
26403935 |
T |
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| Q |
203 |
acatcgttaccgatcatatctaaaaactcttcatttctagattgttattcttattaatatatgttattatgaaatatgaatggatgtgacctagattctc |
302 |
Q |
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| T |
26403936 |
acatcgttaccgatcatatctaaaaactcttcatttctagattgttattcttattaatatatgttattatgaaatatgaatggatgtgacctagattctc |
26404035 |
T |
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| Q |
303 |
tccaaatgcgagactcgatggttttgggactgaaatca--caactcaaattctaattttaccgattcaaatttcaattacaactcaaaattttagttgtt |
400 |
Q |
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| T |
26404036 |
tccaaatgcgagactcgatggttttgggattgaaatcagacaactcaaattctacttttaccgattcaaatttcaaatacaactcaaaattttagttgtt |
26404135 |
T |
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| Q |
401 |
tgttcttcatcaatttctctacatgtcaagtggccgattacgagaagaattaatttagatttcttgtagtagataaatacacgatgaaatgattttaact |
500 |
Q |
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| T |
26404136 |
tgttcttcatcaatttctctacatgtcaagtggccgattacgataagaattaatttagatttcttgtagtagataaatacacgatgaaatgattttaact |
26404235 |
T |
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| Q |
501 |
attctatcttgaccggtctactcatgtatcatct |
534 |
Q |
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| T |
26404236 |
attctatcttgaccggtctactcatgtatcatct |
26404269 |
T |
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