View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1697_low_3 (Length: 423)
Name: NF1697_low_3
Description: NF1697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1697_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 43255481 - 43255879
Alignment:
| Q |
10 |
aattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaa |
109 |
Q |
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| T |
43255481 |
aattttttggacggaaagggataatgtcgcaatcagatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaa |
43255580 |
T |
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| Q |
110 |
gagtgatgacaacgaaaaagaagtacaactcagggagctgcaaaatgatatgcatgttggaatgaatgctaaaccaaaattctcattgaaggtgaaggac |
209 |
Q |
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| T |
43255581 |
gagtgatgacaacgaaaaagaagtacaactcagggagctgcaaaatgatatgcatgttggaatgaatgctaaaccaaaattctcattgaaggtgaaggac |
43255680 |
T |
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| Q |
210 |
gaggatattgaagaaaacggaattaaagagaagggaaacatcaagatgcagaaaaatgtggtggagagtggcgtaaatgatgatgaggaaacaaatgcag |
309 |
Q |
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| T |
43255681 |
gaggatattgaagaaaacggaattaaagagaagggaaacatcaagatgcagaaaaatgtggtggagagtggcgtaaatgatgacgaggaaacaaatgcag |
43255780 |
T |
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| Q |
310 |
tccaaagctttcgtgatgaaaatggtgttccgcctgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatattt |
408 |
Q |
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| T |
43255781 |
tccaaagctttcgtgatgaaaatggtgttccgcctgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatattt |
43255879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 43257623 - 43257752
Alignment:
| Q |
10 |
aattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaa |
109 |
Q |
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| T |
43257623 |
aattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtaacaaatgagtttaa |
43257722 |
T |
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| Q |
110 |
gagtgatgacaacgaaaaagaagtacaact |
139 |
Q |
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| T |
43257723 |
aagtaatgacaaagaaaaagaagtacaact |
43257752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 408
Target Start/End: Original strand, 43257829 - 43257928
Alignment:
| Q |
309 |
gtccaaagctttcgtgatgaaaatggtgttccgcctgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatattt |
408 |
Q |
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| T |
43257829 |
gtccaaagctttcatgatgaaaatggtgttccgcctgacggtggtgaagaaaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtattt |
43257928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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