View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1697_low_5 (Length: 262)
Name: NF1697_low_5
Description: NF1697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1697_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1630331 - 1630576
Alignment:
| Q |
1 |
taaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgc |
100 |
Q |
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| T |
1630331 |
taaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgc |
1630430 |
T |
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| Q |
101 |
acagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatattcatataaaagtacat |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1630431 |
acagaaaaccaatttgaaaatgacccttcttctgtttctgcaagtgacgaatccaaaatttttgattagtatgactatatatattcatataaaagtacat |
1630530 |
T |
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| Q |
201 |
aagcgatagtgttatgacatcaatattatcatatgaatcaaatgta |
246 |
Q |
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| T |
1630531 |
aagcgatagtgctatgacttcaatattattatatgaatcaaatgta |
1630576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1607335 - 1607580
Alignment:
| Q |
1 |
taaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgc |
100 |
Q |
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| T |
1607335 |
taaagcagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgc |
1607434 |
T |
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| Q |
101 |
acagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgac--tatatatattcatat-aaaagta |
197 |
Q |
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| T |
1607435 |
acagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagaaattttgattagtatgactatatatatattcatataaaaagta |
1607534 |
T |
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| Q |
198 |
cataagcgatagtgttatgacatcaatattatcatatgaatcaaat |
243 |
Q |
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| T |
1607535 |
cataagcgatagtgttatgacatcaatattatcatatgaatcaaat |
1607580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1624356 - 1624590
Alignment:
| Q |
1 |
taaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
1624356 |
taaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgc |
1624455 |
T |
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| Q |
101 |
acagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatattcatataaaagtacat |
200 |
Q |
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| T |
1624456 |
acagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacggatccagaaattttgattagtatgactat--------atataaaagtacat |
1624547 |
T |
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| Q |
201 |
aagcgatagtgttatgacatcaatattatcatatgaatcaaat |
243 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
1624548 |
aagccatagtgttatgacatcaatattatcatatgaattaaat |
1624590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10819948 - 10819711
Alignment:
| Q |
1 |
taaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgc |
100 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |
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| T |
10819948 |
taaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttcctttcatgc |
10819849 |
T |
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| Q |
101 |
acagaaaaccaatttggaaatgacccttc------ttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatattcatat-aaa |
193 |
Q |
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| T |
10819848 |
acagaaaaccaatttggaagtgacccttcttctatttctgtttctgcaa-tgacggatccagaaatttagattagtatgactatatatatttatataaaa |
10819750 |
T |
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| Q |
194 |
agtacataagcgatagtgttatgacatcaatattatcat |
232 |
Q |
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| T |
10819749 |
agtacataagcgatagtgttatgacatcaatattatcat |
10819711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 18785385 - 18785528
Alignment:
| Q |
4 |
agcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcaca |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18785385 |
agcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttcctttcatgcata |
18785484 |
T |
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| Q |
104 |
gaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
147 |
Q |
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| T |
18785485 |
gaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
18785528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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