View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1697_low_6 (Length: 249)

Name: NF1697_low_6
Description: NF1697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1697_low_6
NF1697_low_6
[»] chr7 (4 HSPs)
chr7 (40-249)||(11242191-11242400)
chr7 (40-246)||(11268986-11269197)
chr7 (40-246)||(11281004-11281215)
chr7 (130-238)||(6848018-6848127)
[»] chr8 (2 HSPs)
chr8 (84-243)||(9798655-9798816)
chr8 (85-234)||(15201683-15201837)
[»] chr3 (1 HSPs)
chr3 (131-238)||(16999361-16999468)
[»] chr1 (2 HSPs)
chr1 (121-238)||(27318397-27318515)
chr1 (178-246)||(8236099-8236167)
[»] chr5 (2 HSPs)
chr5 (158-246)||(42687862-42687950)
chr5 (195-249)||(20684884-20684938)
[»] chr4 (1 HSPs)
chr4 (149-224)||(21276696-21276772)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 11242191 - 11242400
Alignment:
Q  40 tgaatagttggaaaaacacacggtccttgctgaccatgtccaatattttaacacttggaagctgaaaagtgcacgatccggagaccgtgtgtttttgctg 139  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11242191 tgaatagctggaaaaacacacggtccttgctgaccatgtccaatattttaacacttggaagctgaaaagtgcacgatccggagaccgtatgtttttgctg 11242290  T
Q  140 tcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242291 tcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtct 11242390  T
Q  240 tccatcatac 249  Q
    ||||||||||    
T  11242391 tccatcatac 11242400  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 11269197 - 11268986
Alignment:
Q  40 tgaatagttggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatccgg-----agaccgtgtgttt 133  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | || |      || ||||| ||||    
T  11269197 tgaatagctggaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgctatgcaggccgtgcgttt 11269098  T
Q  134 ttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaat 233  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| | |||||| |||  |||||||| |||||||||| |||||||||| ||||||     
T  11269097 ttgctgttagctagagctgttacaaaactctttggttttcctatttttatgcttgt-aatatgagtttaaggcattgtcttaaggttttaggttataaaa 11268999  T
Q  234 aggtcttccatca 246  Q
    |||||||||||||    
T  11268998 aggtcttccatca 11268986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 11281004 - 11281215
Alignment:
Q  40 tgaatagttggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatccgg-----agaccgtgtgttt 133  Q
    ||||||| | ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | || |      |  ||||| ||||    
T  11281004 tgaatagctagaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgttatgcaagccgtgcgttt 11281103  T
Q  134 ttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaat 233  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||| |||  |||||||||||||||| || |||||||||| ||||||     
T  11281104 ttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgt-aatatgagtttaatgcattgtgttaaggttttaggttataaaa 11281202  T
Q  234 aggtcttccatca 246  Q
    |||||||||||||    
T  11281203 aggtcttccatca 11281215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 6848127 - 6848018
Alignment:
Q  130 gtttttgctgtcagcaagagctgttagaaaactctttggttttccta-ttttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggcta 228  Q
    |||||| |||||||   ||||| ||| ||||||||||| ||||| |  ||||||||| ||||||  |||||||||||| ||| ||||||||| |||||||    
T  6848127 gtttttcctgtcagttggagcttttacaaaactctttgattttctttgttttaaagcctgtaaaaacgagtttaatgccttgccttgaggttctaggcta 6848028  T
Q  229 taaataggtc 238  Q
    ||||||||||    
T  6848027 taaataggtc 6848018  T

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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 9798816 - 9798655
Alignment:
Q  84 attttaacacttggaagctgaaaagtgcacgatccgg-agaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttt-tcctatttta 181  Q
    ||||||||||||||||| ||||||||||||| |   | |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  9798816 attttaacacttggaagttgaaaagtgcacggttgtgcagaccgtgcgtttttgctgtcagctagagctgttacaaaactctttggtttctcctatttta 9798717  T
Q  182 aagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtcttcca 243  Q
    |||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||| ||||    
T  9798716 aagcttgtaaattcgagtttaatgccttgtctagaggttctaggctataaataggtcatcca 9798655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 234
Target Start/End: Original strand, 15201683 - 15201837
Alignment:
Q  85 ttttaacacttggaagctgaaaagtgcacgatcc-----ggagaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttttcctattt 179  Q
    |||||||||||| ||||||||||||||||| ||      | | |||||| ||||||| ||||| | |||||||||| |||||||||||||||||||||||    
T  15201683 ttttaacacttgtaagctgaaaagtgcacggtctactgtgcataccgtgcgtttttgttgtcaactagagctgttacaaaactctttggttttcctattt 15201782  T
Q  180 taaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaata 234  Q
    ||||| |||||||||| ||||||||   ||||||||||||| |||||||||||||    
T  15201783 taaagtttgtaaatccaagtttaatatcttgtcttgaggttctaggctataaata 15201837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 16999468 - 16999361
Alignment:
Q  131 tttttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctata 230  Q
    ||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  16999468 tttttgctgtcagcaggagatgttacaaaactcttcggttttcctattttaaagcttgtaaatccgagtttaatgtcatgtcttgaggttttaggctata 16999369  T
Q  231 aataggtc 238  Q
    ||||||||    
T  16999368 aataggtc 16999361  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 27318397 - 27318515
Alignment:
Q  121 agaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggtttt-cctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggt 219  Q
    |||||||| |||||||||||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||      
T  27318397 agaccgtgcgtttttgctgtcagctggagctgttacaaaactctttggttttccctattttaaagcttgtaaattcgagtttaatgccttgtcttgagaa 27318496  T
Q  220 tttaggctataaataggtc 238  Q
    | || | ||||||||||||    
T  27318497 tctatgttataaataggtc 27318515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 8236099 - 8236167
Alignment:
Q  178 tttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtcttccatca 246  Q
    ||||||| |||||| | || ||||||||| ||||||||||||||||||||||||| || || |||||||    
T  8236099 tttaaagattgtaatttcgtgtttaatgccttgtcttgaggttttaggctataaaaagatcatccatca 8236167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 42687950 - 42687862
Alignment:
Q  158 aaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtcttccatca 246  Q
    ||||||||||||||||| |||||||||||| |||||  ||||||||||  ||||||||||||||||||||||||| ||||| |||||||    
T  42687950 aaactctttggttttcccattttaaagcttataaatatgagtttaatgtcttgtcttgaggttttaggctataaacaggtcctccatca 42687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 20684884 - 20684938
Alignment:
Q  195 cgagtttaatgcattgtcttgaggttttaggctataaataggtcttccatcatac 249  Q
    |||||||||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  20684884 cgagtttaatgtcttgtcttgaggtttcaggctataaataggtcctccatcatac 20684938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 21276696 - 21276772
Alignment:
Q  149 gctgttagaaaactctttggttttcc-tattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttag 224  Q
    ||||||| |||||||||||||||||| || ||||||| |||||| | || ||||||||  |||||||||| ||||||    
T  21276696 gctgttacaaaactctttggttttccttaatttaaagtttgtaatttcgtgtttaatgtcttgtcttgagattttag 21276772  T

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