View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698-Insertion-1 (Length: 421)

Name: NF1698-Insertion-1
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698-Insertion-1
NF1698-Insertion-1
[»] chr1 (2 HSPs)
chr1 (8-250)||(36794934-36795175)
chr1 (321-421)||(36794826-36794926)
[»] chr8 (2 HSPs)
chr8 (8-233)||(39479181-39479408)
chr8 (57-118)||(28481759-28481820)
[»] chr6 (1 HSPs)
chr6 (8-200)||(31981004-31981191)
[»] scaffold0370 (4 HSPs)
scaffold0370 (130-237)||(10962-11069)
scaffold0370 (130-237)||(16252-16359)
scaffold0370 (10-75)||(10530-10593)
scaffold0370 (10-75)||(15820-15883)
[»] chr7 (1 HSPs)
chr7 (10-115)||(35005320-35005424)
[»] chr5 (2 HSPs)
chr5 (130-201)||(24534069-24534139)
chr5 (71-113)||(24534166-24534208)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 36795175 - 36794934
Alignment:
Q  8 cttaataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataattaagatattaaataatttcactaattttacttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36795175 cttaataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataattgagatattaaataatttcactaattttacttt 36795076  T
Q  108 gataatataagnnnnnnnnnnnactaactaatgagggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtcgaggcacatgcc 207  Q
    ||||||||||            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36795075 gataatataa-attttttttttactaactaatgggggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtggaggcacatgcc 36794977  T
Q  208 cacacaaaggcgtatgtagctccgcccctgtaaagatggtctc 250  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||    
T  36794976 cacacaagggcatatgtagctccgcccctggaaagatggtctc 36794934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 321 - 421
Target Start/End: Complemental strand, 36794926 - 36794826
Alignment:
Q  321 aagagactgatttgttaggtaatatcttctcttattacaaaagcttattagatatagctaaagtttaaccttaccctagccatttcccctcccttttgtt 420  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36794926 aagagactgatttgttaggtaatatcttctcttattataaaagcttattagatatagctaaagtttaaccttaccctagccatttcccctcccttttgtt 36794827  T
Q  421 t 421  Q
    |    
T  36794826 t 36794826  T

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Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 39479181 - 39479408
Alignment:
Q  8 cttaataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataattaagatattaaataatttcactaattttacttt 107  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  39479181 cttaataattgagctaaactgacgaaaaatatatattatgattaatatggatcaatttatcaataattgagatattaaataatttcactaattttaattt 39479280  T
Q  108 gataatataag--nnnnnnnnnnnactaactaatgagggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtcgaggcacatg 205  Q
    |||||||||||             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39479281 gataatataagtttttttttttttactaactaatgggggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtggaggcacatg 39479380  T
Q  206 cccacacaaaggcgtatgtagctccgcc 233  Q
    |||| |||| ||  ||||||||||||||    
T  39479381 cccaaacaagggtatatgtagctccgcc 39479408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 28481820 - 28481759
Alignment:
Q  57 gatcaatttatcaataattaagatattaaataatttcactaattttactttgataatataag 118  Q
    |||||||| |||||||| ||||||| |||||||||| ||||||||||||||| ||| |||||    
T  28481820 gatcaattcatcaataaataagatactaaataatttgactaattttactttggtaaaataag 28481759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 31981004 - 31981191
Alignment:
Q  8 cttaataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataattaagatattaaataatttcactaatttt-actt 106  Q
    ||||||||||||| ||| || ||  |||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| || |||||| ||||    
T  31981004 cttaataattgagctaagctcacataaaatatatattatgattaat--ggatcaatttatcaataattaaaatattaaataatttgacaaattttaactt 31981101  T
Q  107 tgataatataagnnnnnnnnnnnactaactaatgagggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtcgaggc 200  Q
    ||||||||| |            |||||||||||   ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  31981102 tgataatatga----atttttttactaactaatggaagtatgaagtagccttaacaccatttactagtactagaattagattatttgtggaggc 31981191  T

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Target: scaffold0370 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 10962 - 11069
Alignment:
Q  130 actaactaatgagggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtcgaggcacatgcccacacaaaggcgtatgtagctc 229  Q
    ||||||||||| | | ||||||||| ||||||||||||||| ||||||| ||||||| ||||| | ||||||||||||||||||| ||| ||||||||||    
T  10962 actaactaatgggagcatgaagtagccttaacaccatttaccagtactaaaattagattatttatggaggcacatgcccacacaagggcatatgtagctc 11061  T
Q  230 cgcccctg 237  Q
    ||||||||    
T  11062 cgcccctg 11069  T

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Target: scaffold0370; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 16252 - 16359
Alignment:
Q  130 actaactaatgagggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtcgaggcacatgcccacacaaaggcgtatgtagctc 229  Q
    ||||||||||| | | ||||||||| ||||||||||||||| ||||||| ||||||| ||||| | ||||||||||||||||||| ||| ||||||||||    
T  16252 actaactaatgggagcatgaagtagccttaacaccatttaccagtactaaaattagattatttatggaggcacatgcccacacaagggcatatgtagctc 16351  T
Q  230 cgcccctg 237  Q
    ||||||||    
T  16352 cgcccctg 16359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 10530 - 10593
Alignment:
Q  10 taataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataatt 75  Q
    ||||||||||| |||||| || ||||||||||||||||||||  ||||||||||||||||||||||    
T  10530 taataattgagctaaactcacagaaaatatatattatgatta--atggatcaatttatcaataatt 10593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 15820 - 15883
Alignment:
Q  10 taataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataatt 75  Q
    ||||||||||| |||||| || ||||||||||||||||||||  ||||||||||||||||||||||    
T  15820 taataattgagctaaactcacagaaaatatatattatgatta--atggatcaatttatcaataatt 15883  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 35005424 - 35005320
Alignment:
Q  10 taataattgagttaaactgacggaaaatatatattatgattaatatggatcaatttatcaataattaagatattaaataatttcactaatttt-actttg 108  Q
    |||||||| || ||| || || ||||||||||||||||||||||  |||| |||||||||||||||  ||||||||||||||| || |||||| ||||||    
T  35005424 taataattaagctaagctcacagaaaatatatattatgattaat--ggattaatttatcaataattgtgatattaaataatttgacaaattttaactttg 35005327  T
Q  109 ataatat 115  Q
    |||||||    
T  35005326 ataatat 35005320  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 24534139 - 24534069
Alignment:
Q  130 actaactaatgagggtatgaagtaggcttaacaccatttactagtactagaattagaatatttgtcgaggca 201  Q
    ||||||||||||||| |||||||||||||||||||| ||| || ||||||||||| | ||||||| ||||||    
T  24534139 actaactaatgagggcatgaagtaggcttaacacca-ttattaatactagaattatattatttgtggaggca 24534069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 24534208 - 24534166
Alignment:
Q  71 taattaagatattaaataatttcactaattttactttgataat 113  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  24534208 taattgagatattaaataatttgactaattttactttgataat 24534166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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