View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698-Insertion-2 (Length: 318)
Name: NF1698-Insertion-2
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 31810566 - 31810256
Alignment:
| Q |
8 |
ctactaattcttttgaattagccactgaaagtttctgcctaactacttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctc |
107 |
Q |
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| T |
31810566 |
ctactaattcttttgaattagccactgaaagtttctgcctaactacttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctc |
31810467 |
T |
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| Q |
108 |
aaatttggatttagagccaccagcaacagcacaatgtaatgcagtgacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgata |
207 |
Q |
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| T |
31810466 |
aaatttggatttagagccaccagcaacagcacaatgtaatgcagtgacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgata |
31810367 |
T |
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| Q |
208 |
tatttgaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaa |
307 |
Q |
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| T |
31810366 |
tatttgaccaccctaatgcttccaaacaaagaagcaatcataaggggtgttctcttttcataacacattttctttgatcctatttttctacagtaccaaa |
31810267 |
T |
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| Q |
308 |
accctgcctca |
318 |
Q |
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| T |
31810266 |
accctgcctca |
31810256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 25817891 - 25817828
Alignment:
| Q |
224 |
tgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcc |
287 |
Q |
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| T |
25817891 |
tgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttgatcc |
25817828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 35643265 - 35643212
Alignment:
| Q |
213 |
gaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctcttttc |
266 |
Q |
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| T |
35643265 |
gaccactctagtgcttccaaacatggaagcaatcataagaggagtcctcttttc |
35643212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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