View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698-Insertion-4 (Length: 719)

Name: NF1698-Insertion-4
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698-Insertion-4
NF1698-Insertion-4
[»] chr2 (15 HSPs)
chr2 (7-711)||(23766904-23767616)
chr2 (293-711)||(23796097-23796515)
chr2 (263-545)||(23784775-23785057)
chr2 (7-248)||(23796545-23796785)
chr2 (653-709)||(1648044-1648100)
chr2 (653-709)||(37520627-37520683)
chr2 (263-492)||(30383595-30383824)
chr2 (263-488)||(30393750-30393975)
chr2 (654-709)||(11992944-11992999)
chr2 (656-709)||(16290782-16290835)
chr2 (653-709)||(8561073-8561129)
chr2 (653-709)||(45329644-45329700)
chr2 (7-80)||(23784463-23784536)
chr2 (263-329)||(8381668-8381734)
chr2 (263-326)||(30482157-30482220)
[»] chr5 (9 HSPs)
chr5 (263-488)||(41628725-41628950)
chr5 (653-709)||(2078543-2078599)
chr5 (655-709)||(39668784-39668838)
chr5 (653-709)||(3292666-3292722)
chr5 (653-709)||(32489137-32489193)
chr5 (653-701)||(10293688-10293736)
chr5 (653-709)||(11069368-11069424)
chr5 (653-706)||(22703833-22703886)
chr5 (672-709)||(6520932-6520969)
[»] chr1 (16 HSPs)
chr1 (653-709)||(4001882-4001938)
chr1 (653-709)||(32079341-32079397)
chr1 (653-709)||(49350476-49350532)
chr1 (653-709)||(9599944-9600000)
chr1 (653-706)||(8670813-8670866)
chr1 (653-709)||(49527440-49527496)
chr1 (653-709)||(52921015-52921071)
chr1 (653-709)||(6985618-6985672)
chr1 (653-709)||(51850797-51850853)
chr1 (653-709)||(52463092-52463148)
chr1 (653-709)||(6039622-6039678)
chr1 (654-709)||(1290195-1290250)
chr1 (153-215)||(38021488-38021550)
chr1 (653-707)||(52815044-52815098)
chr1 (658-706)||(15424517-15424565)
chr1 (656-709)||(40228331-40228384)
[»] chr8 (7 HSPs)
chr8 (653-709)||(16008442-16008498)
chr8 (653-706)||(4061845-4061898)
chr8 (653-709)||(15218286-15218342)
chr8 (653-708)||(3801869-3801924)
chr8 (658-709)||(35323912-35323963)
chr8 (653-704)||(29520527-29520578)
chr8 (654-706)||(35249814-35249870)
[»] chr6 (5 HSPs)
chr6 (653-709)||(20430572-20430628)
chr6 (653-709)||(6079611-6079667)
chr6 (653-705)||(26489377-26489429)
chr6 (657-708)||(22693196-22693247)
chr6 (662-706)||(6056338-6056382)
[»] chr3 (8 HSPs)
chr3 (653-707)||(51450771-51450825)
chr3 (653-709)||(31566264-31566320)
chr3 (653-709)||(52136351-52136407)
chr3 (653-707)||(9256295-9256349)
chr3 (653-709)||(7023183-7023239)
chr3 (665-711)||(21104211-21104257)
chr3 (152-236)||(10877122-10877206)
chr3 (676-709)||(33123880-33123913)
[»] scaffold0001 (1 HSPs)
scaffold0001 (653-709)||(440120-440176)
[»] scaffold0279 (1 HSPs)
scaffold0279 (653-709)||(18419-18475)
[»] chr4 (3 HSPs)
chr4 (653-701)||(54529580-54529628)
chr4 (658-709)||(27453169-27453220)
chr4 (654-709)||(38475069-38475124)
[»] chr7 (4 HSPs)
chr7 (658-702)||(36232115-36232159)
chr7 (653-709)||(46833170-46833223)
chr7 (653-702)||(30089126-30089175)
chr7 (152-216)||(33677469-33677533)
[»] scaffold0245 (1 HSPs)
scaffold0245 (654-709)||(16600-16655)
[»] scaffold0024 (1 HSPs)
scaffold0024 (653-709)||(48262-48318)


Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 7 - 711
Target Start/End: Complemental strand, 23767616 - 23766904
Alignment:
Q  7 acatctaagagttcaaataaacaaaactatgtagattgaagaagtgcaatttgcaagataatcaaaaacaaattattannnnnnnggcattaaccatccg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |       ||| |||||||||||    
T  23767616 acatctaagagttcaaataaacaaaactatgtagattgaagaagtgtaatttgcaagataatcaaaaacaaattataatttttctggcgttaaccatccg 23767517  T
Q  107 gtccccaggaaaagaaaccctggtaatccggagttcatccacggtgtaaggatagcctgacgaagaattattctacctaggaatcgaactcgggttctct 206  Q
    ||||| |||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  23767516 gtccctaggaaaagaaaccctggtaatccggagttcatccgcgaggtaaggatagcctgacgaagaattgttctacctaagaatcgaacccgggttctct 23767417  T
Q  207 cgaatgattcatcattggtgaagcacattagtagagtagtgcnnnnnnnnnnnnnn--------taaccttcaatttttccatgtgaaaagcagggttga 298  Q
    |||||||||||||||||||||||| ||||||||||| |||||                      ||||||||||||||||||||||||||||||||||||    
T  23767416 cgaatgattcatcattggtgaagctcattagtagagcagtgcaaaaaaaataaaaaaataaaaataaccttcaatttttccatgtgaaaagcagggttga 23767317  T
Q  299 ttatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagatat 398  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767316 ttatccttctatgcttggtccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagatat 23767217  T
Q  399 cttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaatgggtgg 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767216 cttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaatgggtgg 23767117  T
Q  499 aatattagtgaagatcaattgtaccacgacatggcttcaatgaggttgtcgctaattggctcaggatgttgatgatgagttcaatgatcattatagctag 598  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23767116 aatattagtgaagatcaattgtaccacggcatgacttcaatgaggttgtcgctaatcggctcaggatgttgatgatgagttcaatgatcattatagctag 23767017  T
Q  599 attaccacatatggttctgagtaaatgtacgcaaacagcagctctatttttactgagagggttgtgttaggcctcgacagccaacgtaaaactttgtcga 698  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767016 attaccacatatggttctgagtaaatgtacgcaaacaacagctctatttttactgagagggttgtgttaggcctcgacagccaacgtaaaactttgtcga 23766917  T
Q  699 atctctatgactt 711  Q
    |||||||||||||    
T  23766916 atctctatgactt 23766904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 293 - 711
Target Start/End: Complemental strand, 23796515 - 23796097
Alignment:
Q  293 ggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23796515 ggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactc 23796416  T
Q  393 agatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23796415 agatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaat 23796316  T
Q  493 gggtggaatattagtgaagatcaattgtaccacgacatggcttcaatgaggttgtcgctaattggctcaggatgttgatgatgagttcaatgatcattat 592  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23796315 gggtggaatattagtgaagatcaattgtaccacggcatgacttcaatgaggttgtcgctaatcggctcaggatgttgatgatgagttcaatgatcattat 23796216  T
Q  593 agctagattaccacatatggttctgagtaaatgtacgcaaacagcagctctatttttactgagagggttgtgttaggcctcgacagccaacgtaaaactt 692  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23796215 agctagattaccacatatggttctgagtaaatgtacgcaaacaacagctctatttttactgagagggttgtgttaggcctcgacagccaacgtaaaactt 23796116  T
Q  693 tgtcgaatctctatgactt 711  Q
    |||||||||||||||||||    
T  23796115 tgtcgaatctctatgactt 23796097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 263 - 545
Target Start/End: Original strand, 23784775 - 23785057
Alignment:
Q  263 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 362  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23784775 taaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 23784874  T
Q  363 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 462  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||    
T  23784875 cataaacttatattgaacctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaac 23784974  T
Q  463 caaataaaagattttttccctgcatacaatgggtggaatattagtgaagatcaattgtaccacgacatggcttcaatgaggtt 545  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  23784975 caaataaaagactttttccctgcatacaatgggtggaatattagtgaagatcaattgtaccataacatgacttcaatgaggtt 23785057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 23796785 - 23796545
Alignment:
Q  7 acatctaagagttcaaataaacaaaactatgtagattgaagaagtgcaatttgcaagataatcaaaaacaaattattannnnnnnggcattaaccatccg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||| |||||||||||    
T  23796785 acatctaagagttcaaataaacaaaactatgtagattgaagaagtgtaatttgcaagataatcaaaaacaaattattatttttttggcgttaaccatccg 23796686  T
Q  107 gtccccaggaaaagaaaccctggtaatccggagttcatccacggtgtaaggatagcctgacgaagaattattctacctaggaatcgaactcgggttctct 206  Q
    ||||||||||||||||||| |||||||||||||||||| | ||  |||||||||||||||||||||||| ||||||||| |||||||||| || ||||||    
T  23796685 gtccccaggaaaagaaacc-tggtaatccggagttcattcgcgaggtaaggatagcctgacgaagaattgttctacctaagaatcgaacttggattctct 23796587  T
Q  207 cgaatgattcatcattggtgaagcacattagtagagtagtgc 248  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  23796586 cgaatgattcatcattggtgaagctcattagtagagcagtgc 23796545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 1648044 - 1648100
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1648044 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 1648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 37520627 - 37520683
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37520627 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 37520683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 492
Target Start/End: Complemental strand, 30383824 - 30383595
Alignment:
Q  263 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 362  Q
    |||||||||| ||||| |  || |||||||||||||||| | ||||||||||||||||||||||||| ||    ||| ||||  |   || || ||||||    
T  30383824 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaactt 30383725  T
Q  363 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 462  Q
     | || ||| || | |  ||||||||| ||||| |||||||| || || ||| ||||||||||||||||  | | | |||||| ||||||| ||||||||    
T  30383724 gaaaatcttgtaattaggctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctgtcaaagtcacccttggttttattccaaac 30383625  T
Q  463 caaataaaagattttttccctgcatacaat 492  Q
    |||||| |||| || |||||||||||||||    
T  30383624 caaatataagaattcttccctgcatacaat 30383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 488
Target Start/End: Complemental strand, 30393975 - 30393750
Alignment:
Q  263 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 362  Q
    |||||||||||| ||| |  || |||||||||||||||| |||||||||||||||||| ||||||||  |     || ||||||| | || || ||||||    
T  30393975 taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaactt 30393876  T
Q  363 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 462  Q
     | || |||||| | |  ||||||||| ||||| || ||||| ||||| ||| ||||||||||||||||  | ||| | | || ||||||| ||||||||    
T  30393875 gaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaac 30393776  T
Q  463 caaataaaagattttttccctgcata 488  Q
    ||||||||||| || || ||||||||    
T  30393775 caaataaaagaattctttcctgcata 30393750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 654 - 709
Target Start/End: Original strand, 11992944 - 11992999
Alignment:
Q  654 agagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11992944 agagggttgtgttaggcctcgacagccaacataaaactttgtcgaatctctatgac 11992999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 656 - 709
Target Start/End: Original strand, 16290782 - 16290835
Alignment:
Q  656 agggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16290782 agggttgtgttaggcctcgatagccaacgtaaaactttgtcgaatctctatgac 16290835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 8561129 - 8561073
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8561129 gagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatccctatgac 8561073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 45329700 - 45329644
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  45329700 gagagggttgtgttaggtctcgacagccaacgtaaaactttatcgaatctctatgac 45329644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 23784463 - 23784536
Alignment:
Q  7 acatctaagagttcaaataaacaaaactatgtagattgaagaagtgcaatttgcaagataatcaaaaacaaatt 80  Q
    |||||||||  ||||||||||||||||||||||||||| ||| ||| |||||||| | ||| ||||||||||||    
T  23784463 acatctaagttttcaaataaacaaaactatgtagattgtagaggtgtaatttgcagggtaaacaaaaacaaatt 23784536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 8381668 - 8381734
Alignment:
Q  263 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctcc 329  Q
    |||||||||||||||| |  || ||||||| ||| |||| |||||||||||| ||||||||||||||    
T  8381668 taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc 8381734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 30482220 - 30482157
Alignment:
Q  263 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttc 326  Q
    |||||||||||||||| |  || || ||||| || |||||| ||||||||||||||||||||||    
T  30482220 taaccttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttc 30482157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 263 - 488
Target Start/End: Original strand, 41628725 - 41628950
Alignment:
Q  263 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 362  Q
    ||||||||||||||||    || ||||| |||||||||| ||||||||||||||||||||||||||| || ||  |  ||||||| | |  || ||||||    
T  41628725 taaccttcaatttttctgaatggaaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt 41628824  T
Q  363 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 462  Q
     | || |||||  | |  |||||| || ||||| || ||||| ||||| ||| | ||||||||||||||  | |||||||||| ||||||||||||||||    
T  41628825 gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgctcaggttctgtgagaatcacccttggttttgttccaaac 41628924  T
Q  463 caaataaaagattttttccctgcata 488  Q
    || |||||||| || |||||| ||||    
T  41628925 cacataaaagaattcttccctacata 41628950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 2078599 - 2078543
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2078599 gagagggttgtgttaggcctcgacagccaaagtaaaactttgtcgaatctctatgac 2078543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 655 - 709
Target Start/End: Complemental strand, 39668838 - 39668784
Alignment:
Q  655 gagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39668838 gagggttgtgttagtcctcgacagccaacgtaaaactttgtcgaatctctatgac 39668784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 3292666 - 3292722
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  3292666 gagagggttgtgttaggcctcaacagccaacataaaactttgtcgaatcactatgac 3292722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 32489137 - 32489193
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  32489137 gagagggttgtgttagacctcgacagtcaacgtaaaactttgtcgaatccctatgac 32489193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 701
Target Start/End: Complemental strand, 10293736 - 10293688
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatc 701  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  10293736 gagagggttgtgttaggcctcgacatgcaacgtaaaactttgtcgaatc 10293688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 11069424 - 11069368
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  11069424 gagagcgttgtgttaggcctcaacaaccaacgcaaaactttgtcgaatctctatgac 11069368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 653 - 706
Target Start/End: Complemental strand, 22703886 - 22703833
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctat 706  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||| |||||    
T  22703886 gagagggttgtgttagacctcgacagccaacacaaaactttgtcgaatttctat 22703833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 709
Target Start/End: Original strand, 6520932 - 6520969
Alignment:
Q  672 tcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  6520932 tcgacagtcaacgtaaaactttgtcgaatctctatgac 6520969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 4001882 - 4001938
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4001882 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 4001938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 32079341 - 32079397
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32079341 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 32079397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 49350532 - 49350476
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49350532 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 49350476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 9599944 - 9600000
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9599944 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcggatctctatgac 9600000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 706
Target Start/End: Complemental strand, 8670866 - 8670813
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctat 706  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8670866 gagagggttgtgttaggcctcgacagccaatgtaaaactttgtcgaatctctat 8670813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 49527496 - 49527440
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49527496 gagaggattgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgac 49527440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 52921015 - 52921071
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  52921015 gagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgac 52921071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 6985672 - 6985618
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6985672 gagagggttgtgttaggcc--gacagccaacgtaaaactttgtcgaatctctatgac 6985618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 51850797 - 51850853
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  51850797 gagagggttgtgttaggcctcgacatccaacataaaacttcgtcgaatctctatgac 51850853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 52463148 - 52463092
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  52463148 gagagggttgtgttagacctcgactgccaacttaaaactttgtcgaatctctatgac 52463092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 6039622 - 6039678
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  6039622 gagaaggttgtattaggcctcaacagccaacgtaaaactttgttgaatctctatgac 6039678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 709
Target Start/End: Complemental strand, 1290250 - 1290195
Alignment:
Q  654 agagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||| |||||| |||||||||||||||||||| | |||||||||||||    
T  1290250 agagggttgtgtcaggccttgacagccaacgtaaaactttttagaatctctatgac 1290195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 38021550 - 38021488
Alignment:
Q  153 taaggatagcctgacgaagaattattctacctaggaatcgaactcgggttctctcgaatgatt 215  Q
    ||||||||||||||| || || | ||||||||||||||||||||| ||||||||| |||||||    
T  38021550 taaggatagcctgacaaacaaatgttctacctaggaatcgaactcaggttctctcaaatgatt 38021488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 707
Target Start/End: Original strand, 52815044 - 52815098
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatg 707  Q
    |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||    
T  52815044 gagagggttgtgttaggccttgacaaccaacgtaaaactttgttgactctctatg 52815098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 706
Target Start/End: Complemental strand, 15424565 - 15424517
Alignment:
Q  658 ggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctat 706  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  15424565 ggttgtgttaggccacgacaaccaacgtaaaactttgtcaaatctctat 15424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 709
Target Start/End: Original strand, 40228331 - 40228384
Alignment:
Q  656 agggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||| |||||  ||||| ||||||||||||||| |||||||| ||||||    
T  40228331 agggttgtgctaggcaacgacaaccaacgtaaaactttttcgaatctttatgac 40228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 16008498 - 16008442
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16008498 gagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgac 16008442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 706
Target Start/End: Original strand, 4061845 - 4061898
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctat 706  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4061845 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctat 4061898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 15218342 - 15218286
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||    
T  15218342 gagagggttgtgttaagcctcgatagtcaacgtaaaattttgtcgaatctctatgac 15218286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 653 - 708
Target Start/End: Original strand, 3801869 - 3801924
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatga 708  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  3801869 gagagggctgtgttaggtctcgacaaccaacgtaaaactttgttgaatctctatga 3801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 658 - 709
Target Start/End: Original strand, 35323912 - 35323963
Alignment:
Q  658 ggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||| || ||||||||||||||||| ||||| |||||||||||||||||||    
T  35323912 ggttgggtcaggcctcgacagccaacttaaaattttgtcgaatctctatgac 35323963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 704
Target Start/End: Original strand, 29520527 - 29520578
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctct 704  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||| ||| ||||    
T  29520527 gagagggttgtgttaggcctctacaaccaacgtaaaactctgttgaacctct 29520578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 706
Target Start/End: Original strand, 35249814 - 35249870
Alignment:
Q  654 agagggttgtgttaggcctcgacag----ccaacgtaaaactttgtcgaatctctat 706  Q
    ||||||||||| |||||||||||||    ||||| ||||||||||||||||||||||    
T  35249814 agagggttgtgataggcctcgacagacaaccaacataaaactttgtcgaatctctat 35249870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 20430628 - 20430572
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20430628 gagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgac 20430572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 6079611 - 6079667
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6079611 gagagggttgcgttaggcctcgacagtcaacgtaaaactttgtcgaatctctatgac 6079667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 653 - 705
Target Start/End: Original strand, 26489377 - 26489429
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctcta 705  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  26489377 gagagggttgtgttagtcctcgacaaccaacgtaaaattttgtcgcatctcta 26489429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 657 - 708
Target Start/End: Original strand, 22693196 - 22693247
Alignment:
Q  657 gggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatga 708  Q
    ||||||||| |||| |||||| |||||||||||||||||||||||| |||||    
T  22693196 gggttgtgtcaggcttcgacaaccaacgtaaaactttgtcgaatctttatga 22693247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 706
Target Start/End: Complemental strand, 6056382 - 6056338
Alignment:
Q  662 gtgttaggcctcgacagccaacgtaaaactttgtcgaatctctat 706  Q
    |||||||| ||||||||||||||||||||||| || |||||||||    
T  6056382 gtgttaggtctcgacagccaacgtaaaactttatcaaatctctat 6056338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 653 - 707
Target Start/End: Complemental strand, 51450825 - 51450771
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatg 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51450825 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatg 51450771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 31566320 - 31566264
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  31566320 gagagggttgtgttaggcctcgacagccaacgtagaactttgtagaatctctatgac 31566264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 52136351 - 52136407
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  52136351 gagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatctctatgac 52136407  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 653 - 707
Target Start/End: Original strand, 9256295 - 9256349
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatg 707  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9256295 gagagggttgtgttaggcctcaacagccaacgtaaaattttgtcgaatctctatg 9256349  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 7023183 - 7023239
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  7023183 gagagggttgtgttaggcctcaacagccaacgtaaaactttatcaaatctctatgac 7023239  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 711
Target Start/End: Complemental strand, 21104257 - 21104211
Alignment:
Q  665 ttaggcctcgacagccaacgtaaaactttgtcgaatctctatgactt 711  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||    
T  21104257 ttaggcctcgacatccaatgtaaaattttgtcgaatctctatgactt 21104211  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 10877206 - 10877122
Alignment:
Q  152 gtaaggatagcctgacgaagaattattctacctaggaatcgaactcgggttctctcgaatgattcatcattggtgaagcacatta 236  Q
    |||||||||| ||| | ||||||| |||||| |||||||||||||| ||||||| | || ||||| || | |||||||| |||||    
T  10877206 gtaaggatagtctggccaagaattgttctacataggaatcgaactcaggttctcccaaacgattcgtcctcggtgaagctcatta 10877122  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 709
Target Start/End: Complemental strand, 33123913 - 33123880
Alignment:
Q  676 cagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||||||||||||||||| |||||||    
T  33123913 cagccaacgtaaaactttgtcgaatccctatgac 33123880  T

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Target: scaffold0001 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 440120 - 440176
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  440120 gagaggattgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctatgac 440176  T

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Target: scaffold0279 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 709
Target Start/End: Original strand, 18419 - 18475
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  18419 gagaaggttgtgttaagcctcgacaaccaacgtaaaactttgtcgaatctctatgac 18475  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 701
Target Start/End: Original strand, 54529580 - 54529628
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatc 701  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54529580 gagagggttgtgttaggcctcgacagccaacgtaacactttgtcgaatc 54529628  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 658 - 709
Target Start/End: Complemental strand, 27453220 - 27453169
Alignment:
Q  658 ggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27453220 ggttatgttatgcctcgacagccaacgtaaaactttgccgaatctctatgac 27453169  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 709
Target Start/End: Complemental strand, 38475124 - 38475069
Alignment:
Q  654 agagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  38475124 agaggcttgtgttaggcctcaatagccaacgtaaaacgttgtcgaatctctatgac 38475069  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 658 - 702
Target Start/End: Original strand, 36232115 - 36232159
Alignment:
Q  658 ggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatct 702  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  36232115 ggttgtgttaggcctcgacagccaacataaaactttgtcgaatct 36232159  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 46833223 - 46833170
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    ||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||    
T  46833223 gagagggttgtgttaggcctcaac---caacgtaaaactttgtcgaatctctatgac 46833170  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 702
Target Start/End: Original strand, 30089126 - 30089175
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatct 702  Q
    ||||||||||| ||| | ||||||||| ||||||||||||||||||||||    
T  30089126 gagagggttgtattaagtctcgacagctaacgtaaaactttgtcgaatct 30089175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 33677469 - 33677533
Alignment:
Q  152 gtaaggatagcctgacgaagaattattctacctaggaatcgaactcgggttctctcgaatgattc 216  Q
    ||||| |||||| ||| || |||||||| ||| |||||||||||||| |||||| ||||||||||    
T  33677469 gtaagtatagcccgactaaaaattattccacccaggaatcgaactcgcgttctcccgaatgattc 33677533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 709
Target Start/End: Complemental strand, 16655 - 16600
Alignment:
Q  654 agagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||||| |||||| |||||||||||||||||||| | |||||||||||||    
T  16655 agagggttgtgtcaggccttgacagccaacgtaaaactttttagaatctctatgac 16600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 653 - 709
Target Start/End: Complemental strand, 48318 - 48262
Alignment:
Q  653 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 709  Q
    |||||||||  |||||||||||||||||||| || |||||| |||||||||||||||    
T  48318 gagagggtttcgttaggcctcgacagccaacatataactttatcgaatctctatgac 48262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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