View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698-Insertion-5 (Length: 879)

Name: NF1698-Insertion-5
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698-Insertion-5
NF1698-Insertion-5
[»] chr3 (18 HSPs)
chr3 (12-622)||(25515801-25516410)
chr3 (806-879)||(25516406-25516479)
chr3 (741-804)||(622347-622410)
chr3 (741-803)||(44334690-44334752)
chr3 (745-803)||(39932267-39932325)
chr3 (623-667)||(43900784-43900828)
chr3 (623-667)||(44334828-44334872)
chr3 (741-804)||(4208116-4208179)
chr3 (623-667)||(28300286-28300330)
chr3 (12-100)||(35315922-35316010)
chr3 (623-667)||(35425699-35425743)
chr3 (623-667)||(42424210-42424254)
chr3 (623-667)||(43499588-43499632)
chr3 (623-666)||(24748595-24748638)
chr3 (46-100)||(54261192-54261246)
chr3 (622-667)||(8066354-8066399)
chr3 (623-664)||(9027873-9027914)
chr3 (623-664)||(46315985-46316026)
[»] chr8 (14 HSPs)
chr8 (741-804)||(29910100-29910163)
chr8 (741-804)||(41304870-41304933)
chr8 (741-803)||(8074614-8074676)
chr8 (742-804)||(27631068-27631130)
chr8 (627-667)||(3756905-3756945)
chr8 (623-667)||(29910239-29910283)
chr8 (623-667)||(34996387-34996431)
chr8 (623-667)||(40842014-40842058)
chr8 (12-100)||(44893330-44893418)
chr8 (624-667)||(5642417-5642460)
chr8 (624-667)||(5644358-5644401)
chr8 (749-804)||(11155770-11155825)
chr8 (11-100)||(9860046-9860136)
chr8 (623-664)||(3950110-3950151)
[»] chr5 (14 HSPs)
chr5 (741-804)||(42825234-42825297)
chr5 (745-804)||(18638729-18638788)
chr5 (741-795)||(9277509-9277562)
chr5 (12-100)||(8513486-8513574)
chr5 (623-667)||(20125389-20125433)
chr5 (623-667)||(27340869-27340913)
chr5 (623-667)||(39840736-39840780)
chr5 (623-665)||(9277640-9277682)
chr5 (12-110)||(13664217-13664315)
chr5 (623-661)||(42825166-42825204)
chr5 (742-803)||(3722965-3723026)
chr5 (623-660)||(12878756-12878793)
chr5 (623-664)||(21062782-21062823)
chr5 (741-802)||(39840593-39840654)
[»] chr2 (14 HSPs)
chr2 (741-804)||(546273-546336)
chr2 (741-804)||(7497879-7497942)
chr2 (741-802)||(6666140-6666201)
chr2 (12-100)||(21180366-21180454)
chr2 (623-667)||(546412-546456)
chr2 (623-667)||(7498018-7498062)
chr2 (623-667)||(11442672-11442716)
chr2 (623-667)||(34442113-34442157)
chr2 (12-100)||(39201560-39201648)
chr2 (623-667)||(42554776-42554820)
chr2 (623-667)||(42665839-42665883)
chr2 (741-803)||(2308213-2308275)
chr2 (626-667)||(35965578-35965619)
chr2 (622-667)||(39247490-39247535)
[»] chr1 (21 HSPs)
chr1 (741-804)||(24775095-24775158)
chr1 (741-804)||(33422107-33422170)
chr1 (741-804)||(44112574-44112637)
chr1 (741-804)||(44641791-44641854)
chr1 (741-804)||(49589860-49589923)
chr1 (752-804)||(39220326-39220378)
chr1 (623-667)||(8464540-8464584)
chr1 (741-804)||(30530287-30530350)
chr1 (626-667)||(52369138-52369179)
chr1 (52-100)||(1764282-1764330)
chr1 (623-667)||(5315211-5315255)
chr1 (623-667)||(24774975-24775019)
chr1 (623-667)||(30530426-30530470)
chr1 (623-667)||(33422246-33422290)
chr1 (623-667)||(34002347-34002391)
chr1 (623-667)||(44112454-44112498)
chr1 (623-667)||(44641930-44641974)
chr1 (45-100)||(9853363-9853418)
chr1 (624-667)||(11068426-11068469)
chr1 (45-100)||(33418201-33418256)
chr1 (623-662)||(49589995-49590034)
[»] scaffold0238 (2 HSPs)
scaffold0238 (745-804)||(16515-16574)
scaffold0238 (622-667)||(16386-16431)
[»] chr6 (9 HSPs)
chr6 (745-804)||(23633213-23633272)
chr6 (623-667)||(23633350-23633394)
chr6 (741-804)||(7693435-7693498)
chr6 (623-667)||(3821378-3821422)
chr6 (623-667)||(19789103-19789147)
chr6 (632-667)||(16199267-16199302)
chr6 (741-804)||(19788964-19789027)
chr6 (11-97)||(10312716-10312802)
chr6 (623-664)||(2333365-2333406)
[»] chr4 (18 HSPs)
chr4 (741-804)||(1688316-1688379)
chr4 (25-100)||(13073509-13073584)
chr4 (13-94)||(41162935-41163016)
chr4 (623-667)||(10096769-10096813)
chr4 (623-667)||(42516650-42516694)
chr4 (623-667)||(51397898-51397942)
chr4 (46-100)||(2559278-2559332)
chr4 (741-799)||(42516754-42516812)
chr4 (12-100)||(3574498-3574586)
chr4 (623-667)||(17363230-17363274)
chr4 (623-667)||(25139982-25140026)
chr4 (623-667)||(31147231-31147275)
chr4 (623-667)||(51318703-51318747)
chr4 (52-100)||(55005398-55005446)
chr4 (741-804)||(8906352-8906415)
chr4 (626-667)||(34114144-34114185)
chr4 (623-664)||(35332706-35332747)
chr4 (622-667)||(46794528-46794573)
[»] scaffold0111 (2 HSPs)
scaffold0111 (741-803)||(36757-36819)
scaffold0111 (623-667)||(36893-36937)
[»] chr7 (10 HSPs)
chr7 (623-667)||(17500697-17500741)
chr7 (623-667)||(17552473-17552517)
chr7 (623-667)||(16567316-16567360)
chr7 (623-667)||(16598302-16598346)
chr7 (741-803)||(49089053-49089115)
chr7 (626-667)||(47644708-47644749)
chr7 (742-802)||(5724159-5724219)
chr7 (741-804)||(17500817-17500880)
chr7 (741-804)||(17552334-17552397)
chr7 (12-93)||(18785645-18785726)
[»] scaffold0504 (2 HSPs)
scaffold0504 (623-667)||(10762-10806)
scaffold0504 (771-802)||(10637-10668)
[»] scaffold0154 (2 HSPs)
scaffold0154 (623-667)||(4315-4359)
scaffold0154 (742-800)||(4435-4493)
[»] scaffold0024 (1 HSPs)
scaffold0024 (623-667)||(60469-60513)
[»] scaffold0020 (2 HSPs)
scaffold0020 (623-667)||(155906-155950)
scaffold0020 (741-804)||(156026-156089)
[»] scaffold0014 (1 HSPs)
scaffold0014 (623-667)||(199266-199310)


Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 622
Target Start/End: Original strand, 25515801 - 25516410
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcctccttaattag 111  Q
    ||||||||||||||||| |||||| ||| ||| |||||||||| |||  |||||||  | | ||||||||||| ||||||||||||||||||||||||||    
T  25515801 gtagaagcatgtacactagccaaacattgttc-ccctagtaatagaacccggtattccctatgtacgtccttgaaaggagctctttgcctccttaattag 25515899  T
Q  112 agtcttgtgttgaaacatatttgacttttgatttggagtgctggtattagaaatttatggagcaccacaaaatgggctttttcataaataaattagtgga 211  Q
    ||||||||  || ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25515900 agtcttgt--tgcaacatatttgacttttgatttggagtgttgatattagaaatttatggagcaccacaaaatgggctttttcataaataaattagtggc 25515997  T
Q  212 aacgtgtttttgcatgtgcttgttaaaatttccctttattgttccttagttttctatagtttctataatttaataataatgtatgtatataccttctttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  25515998 aacgtgtttttgcatgtgcttgttaaaatttccctttattgttccttagttttctatagtttctataatttaataata----atgtatataccttctttt 25516093  T
Q  312 gcacgtcattgttcccttgtatgtgacttaattttgtctataagtggaagaatggttttgtgttctccatgcattggcaataataa-------ggcaatc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||       ||||| |    
T  25516094 gcacgtcattgttcccttgtatgtgacttaattttgtctataagtggaggaatggttttgtgttctccatgcattagcaataataaaatatttggcaacc 25516193  T
Q  405 acttcccacaaattctattatttcttctttcagctgtattcctttggacatgataaaataaataatataacccaattatacacggtttatttataggtac 504  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25516194 acttcccacaaattctaatttttcttctttcagctgtattactttggacataataaaataaataatataacccaattatacacggtttatttataggtac 25516293  T
Q  505 aggtagtatttttattgcagggtacaagacacatgtagttgttttttgtcttttcttctagccaaatataaaatatgaaatggttttaaattggaagtca 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25516294 aggtagtatttttattgcagggtacaagacacatgtagttgttttttgtcttttcttctagccaaatataaaatatg-aatggttttaaattggaagtca 25516392  T
Q  605 atgccattataaaagtgg 622  Q
    ||||||||||||||||||    
T  25516393 atgccattataaaagtgg 25516410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 806 - 879
Target Start/End: Original strand, 25516406 - 25516479
Alignment:
Q  806 agtgaaaaccctactttatcatcacaatacacatcatcacctttgtatatggtttaaagtgtgtagattatgtt 879  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25516406 agtggaaaccctactttatcatcacaatacacatcatcacctttgtatatggtttaaagtgtgtagattatgtt 25516479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 622410 - 622347
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  622410 gaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 622347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 44334752 - 44334690
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  44334752 gaagagagaaaataaaaattgtcaacaaagttgtcacaaatggttgtcaatatatcactactc 44334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 745 - 803
Target Start/End: Original strand, 39932267 - 39932325
Alignment:
Q  745 agagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||    
T  39932267 agagaaaataaaagttgtcaacaaagttgtcaaaaatgattgtcagtatatcactactc 39932325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 43900828 - 43900784
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  43900828 gagaaatgatatttgtacaaccactttattacaactttttgacaa 43900784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 44334872 - 44334828
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  44334872 gagaaatgatatttgtacaaccactttattacaactttttgacaa 44334828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 4208179 - 4208116
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||| ||||||| ||||||||||| |||||||||| | ||||||||  |||||||||||||||    
T  4208179 gaagaaagaaaatgaaagttgtcaataaaattgtcacagatggttgtacatatatcactactct 4208116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 28300286 - 28300330
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||    
T  28300286 gagaaatgatatttgtacaaccattttattataattttttgacaa 28300330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 35316010 - 35315922
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| |||||  |||||||||| | || ||| |||| | |||||||  || |||| ||| ||||||||||||||||||||||||||||    
T  35316010 gtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccgatattctccgggtacgtccttggaaggagctctttgcc 35315922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 35425743 - 35425699
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||    
T  35425743 gagaaatgatatatgtacaaccactttattacaactttttgacaa 35425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 42424210 - 42424254
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||||    
T  42424210 gagaattgatatttgtacgaccactttattataactttttgacaa 42424254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 43499632 - 43499588
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| || ||||||||| |||||    
T  43499632 gagaaatgatatttgtacaaccactttatgataacttttggacaa 43499588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 666
Target Start/End: Original strand, 24748595 - 24748638
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgaca 666  Q
    |||||||||||||||||||||||||| |||  ||||||||||||    
T  24748595 gagaaatgatatttgtacaaccactttattgcaactttttgaca 24748638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 54261246 - 54261192
Alignment:
Q  46 cctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| |||||||  |||||||  ||||||||||||||||||||||||| |||||    
T  54261246 cctaggaatcgaacccggtattccccaggtacgtccttggaaggagctccttgcc 54261192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 667
Target Start/End: Original strand, 8066354 - 8066399
Alignment:
Q  622 ggagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||||  | | |||||||||||||    
T  8066354 ggagaaatgatatttgtacaaccactttctcacaactttttgacaa 8066399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 9027873 - 9027914
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttga 664  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
T  9027873 gagaaatgatatttgtacaaccactttgtgataactttttga 9027914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Complemental strand, 46316026 - 46315985
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttga 664  Q
    |||||||||||||||||||||||||| || | ||||||||||    
T  46316026 gagaaatgatatttgtacaaccactttatgacaactttttga 46315985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 29910163 - 29910100
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29910163 gaagagagaaaataaaagttgtcaacaaagttgtcaaaaatggttgtcaatatatcactactct 29910100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 41304933 - 41304870
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  41304933 gaagagagaaaataaaagttgtcaacaaagttgtcacaaattgttgtcaatatatcactactct 41304870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 8074676 - 8074614
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    ||||||||||||| |||||||||| |||| |||||||| ||| ||||  ||||||||||||||    
T  8074676 gaagagagaaaatgaaagttgtcatcaaagttgtcaaatatgattgtacatatatcactactc 8074614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 742 - 804
Target Start/End: Original strand, 27631068 - 27631130
Alignment:
Q  742 aagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||||||||||| |||||||| |||| ||||||  |||||||||  |||||||||||||||    
T  27631068 aagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcactactct 27631130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 3756905 - 3756945
Alignment:
Q  627 aatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  3756905 aatgatatttgtacaaccactttattacaactttttgacaa 3756945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 29910283 - 29910239
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||    
T  29910283 gagaaatgatatttgcacaaccactttattataattttttgacaa 29910239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 34996431 - 34996387
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  34996431 gagaaatgatatttgtacaaccactttattacaattttttgacaa 34996387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 40842014 - 40842058
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||||||  | |||||||||||||||    
T  40842014 gagaaatgatatttgtacaaccactttgtgataactttttgacaa 40842058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 44893330 - 44893418
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| ||||| |||||||||||  ||| ||| |||||| ||| |||  |||||||  || |||||||||||||||||||||| |||||    
T  44893330 gtagaggcatgcacactggccaagcattgttccccctagaaattgaacccggtattccccgggtacgtccttggaaggagctccttgcc 44893418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 667
Target Start/End: Complemental strand, 5642460 - 5642417
Alignment:
Q  624 agaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||| |||||||||| |||| |||||||||||||    
T  5642460 agaaatgatatttggacaaccactttattaaaactttttgacaa 5642417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 667
Target Start/End: Complemental strand, 5644401 - 5644358
Alignment:
Q  624 agaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||| |||||||||| |||| |||||||||||||    
T  5644401 agaaatgatatttggacaaccactttattaaaactttttgacaa 5644358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 804
Target Start/End: Complemental strand, 11155825 - 11155770
Alignment:
Q  749 aaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||||||||||||| |||| |||||| |||||||| |  |||||||||||||||    
T  11155825 aaaataaaagttgtcatcaaagttgtcacaaatggttctacatatatcactactct 11155770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 9860046 - 9860136
Alignment:
Q  11 tgtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccagg-tacgtccttggaaggagctctttgcc 100  Q
    |||||| ||||| ||||||||||| | || ||| |||| | |||||||  |||||||  || || ||||||||||||||||||||||||||    
T  9860046 tgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaacccggtattcccccggatacgtccttggaaggagctctttgcc 9860136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 3950110 - 3950151
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttga 664  Q
    ||||||||||||||||||||||| || ||||||| |||||||    
T  3950110 gagaaatgatatttgtacaaccattttattataattttttga 3950151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 741 - 804
Target Start/End: Original strand, 42825234 - 42825297
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42825234 gaagagagaaaataaaagttgtcaacaaaattgtcacaaatggttgtcaatatatcactactct 42825297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 745 - 804
Target Start/End: Complemental strand, 18638788 - 18638729
Alignment:
Q  745 agagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||||||||||||||||| |||| |||||  ||||||||||  |||||||||||||||    
T  18638788 agagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 18638729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 795
Target Start/End: Complemental strand, 9277562 - 9277509
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatat 795  Q
    |||||||||||||||||||| | |||||| |||||| ||||||||||||||||||    
T  9277562 gaagagagaaaataaaagttat-aacaaagttgtcataaatggttgtcaatatat 9277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 8513574 - 8513486
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| |||||| ||||||||||  ||| ||  |||||| |||||||  |||||||  || |||||||||||||||||||||| |||||    
T  8513574 gtagaggcatgtgcactggccaagcattgtttcccctaggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgcc 8513486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 20125389 - 20125433
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  20125389 gagaaatgatatttgtacaaccactttattacaattttttgacaa 20125433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 27340869 - 27340913
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||    
T  27340869 gagaaatgatatttgtacaatcactttattataattttttgacaa 27340913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 39840780 - 39840736
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||    
T  39840780 gagaaataatatttgtacaaccactttattacaactttttgacaa 39840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 623 - 665
Target Start/End: Complemental strand, 9277682 - 9277640
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgac 665  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||    
T  9277682 gagaaatgatatttgtacaactactttattataattttttgac 9277640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 13664315 - 13664217
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcctccttaatta 110  Q
    ||||| |||||  |||||||||| | || ||| ||||  ||||||||| |||||||  | || |||||||||||||||||||| ||||| | |||||||    
T  13664315 gtagaggcatgcgcactggccaagtgttgttccccctgataatcgaatccggtattccctagatacgtccttggaaggagctccttgccacattaatta 13664217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 42825166 - 42825204
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttt 661  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  42825166 gagaaatgatatttgtacaaccactttattataattttt 42825204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 803
Target Start/End: Complemental strand, 3723026 - 3722965
Alignment:
Q  742 aagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    |||||||||||| |||||||||| |||| |||||  ||||||||||  |||||||| |||||    
T  3723026 aagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcattactc 3722965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 660
Target Start/End: Original strand, 12878756 - 12878793
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataacttt 660  Q
    ||||||||||||||||||||||| || |||||||||||    
T  12878756 gagaaatgatatttgtacaaccattttattataacttt 12878793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 21062782 - 21062823
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttga 664  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  21062782 gagaaatgatatttctacaatcactttattataactttttga 21062823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 802
Target Start/End: Complemental strand, 39840654 - 39840593
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactact 802  Q
    |||||| ||||||||||||||||| |||| || ||| |||| |||||  |||||||||||||    
T  39840654 gaagagggaaaataaaagttgtcatcaaagttatcacaaatagttgtacatatatcactact 39840593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 546336 - 546273
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  546336 gaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 546273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 7497942 - 7497879
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7497942 gaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 7497879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 741 - 802
Target Start/End: Original strand, 6666140 - 6666201
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactact 802  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  6666140 gaagagagaaaataaaagttgtcaacaaaattgtcacaaatgattatcaatatatcactact 6666201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 21180366 - 21180454
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| |||||| |||||||||| | || |||||| | | |||||||| ||||||| | | |||||||||||||||||||||| |||||    
T  21180366 gtagaggcatgtgcactggccaagtgttgttctccatgggaatcgaatccggtattcttcgggtacgtccttggaaggagctccttgcc 21180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 546456 - 546412
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||    
T  546456 gagaaatgatatttgtacaaccactttattacaactttttaacaa 546412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 7498062 - 7498018
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || |||| |||||||||||||    
T  7498062 gagaaatgatatttgtacaaccattttattacaactttttgacaa 7498018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 11442672 - 11442716
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||    
T  11442672 gagaaatgatatttgtacaaccatttcattacaattttttgacaa 11442716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 34442113 - 34442157
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| || |||| ||||||||||    
T  34442113 gagaaatgatatttgtacaaccactttatgataattttttgacaa 34442157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 39201560 - 39201648
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| ||||| |||||||||||| ||| ||| ||||   ||||||||||||||||   |  ||||||||||||||||||||| |||||    
T  39201560 gtagaggcatgcacactggccaaacattgttccccctgagaatcgaattcggtattcctcgagtacgtccttggaaggagctccttgcc 39201648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 42554776 - 42554820
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||    
T  42554776 gagaaatgatatttgtacaaccactttattacaacttttttacaa 42554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 42665883 - 42665839
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||    
T  42665883 gagaaatgatatttgtacaatcactttattacaactttttgacaa 42665839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 2308275 - 2308213
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    ||||||||||||| |||||||||| |||| |||||| | ||||||||  | ||||||||||||    
T  2308275 gaagagagaaaatgaaagttgtcatcaaagttgtcatatatggttgtacaaatatcactactc 2308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 35965578 - 35965619
Alignment:
Q  626 aaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| |||| || ||||||||||    
T  35965578 aaatgatatttgtacaaccactttattacaattttttgacaa 35965619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 667
Target Start/End: Complemental strand, 39247535 - 39247490
Alignment:
Q  622 ggagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||| ||  | |||||||||||||||    
T  39247535 ggagaaatgatatttgtacaaccattttgtgataactttttgacaa 39247490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 804
Target Start/End: Original strand, 24775095 - 24775158
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  24775095 gaagagagaaaataaaaattgtcaacaaagttgtcaaaaatggttgtcaatatatcactactct 24775158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 33422170 - 33422107
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  33422170 gaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 33422107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 804
Target Start/End: Original strand, 44112574 - 44112637
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  44112574 gaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 44112637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 44641854 - 44641791
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  44641854 gaagagagaaaataaaagttgtcaacaaagttatcacaaatggttgtcaatatatcactactct 44641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 49589923 - 49589860
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||    
T  49589923 gaagagagaaaataaaagttgtcaacaaagttgtcacaaatagttatcaatatatcactactct 49589860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 752 - 804
Target Start/End: Original strand, 39220326 - 39220378
Alignment:
Q  752 ataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||| ||||||||||| |||||| |||||||||||||||||||||||||||    
T  39220326 ataaaaattgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 39220378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 8464584 - 8464540
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  8464584 gagaaatgatatttgtacaaccactttattacaactttttgacaa 8464540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 30530350 - 30530287
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||| |||||||||| |||| |||||  ||||||||||  |||||||||||||||    
T  30530350 gaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 30530287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 667
Target Start/End: Complemental strand, 52369179 - 52369138
Alignment:
Q  626 aaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  52369179 aaatgatatttgtacaactactttattataactttttgacaa 52369138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 1764282 - 1764330
Alignment:
Q  52 aatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    |||||||| |||||||| || |||||||||||||||||||||| |||||    
T  1764282 aatcgaatccggtatttcccgggtacgtccttggaaggagctccttgcc 1764330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 5315211 - 5315255
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  5315211 gagaaatgatatttgtacaacctctttattataattttttgacaa 5315255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 24774975 - 24775019
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||    
T  24774975 gagaaatgatatttgaacaaccactttattacaactttttgacaa 24775019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 30530470 - 30530426
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||    
T  30530470 gagaaatgatatttgtacaaccactttattacaactttttaacaa 30530426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 33422290 - 33422246
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||    
T  33422290 gagaaatgatatctgtacaaccactttattacaactttttgacaa 33422246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 34002391 - 34002347
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||    
T  34002391 gagaaatgatatttgtacaaccactttattacaactttttaacaa 34002347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 44112454 - 44112498
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  44112454 gagaaatgatatttgtacaaccactttattacaattttttgacaa 44112498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 44641974 - 44641930
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  44641974 gagaaatgatatttgtacaaccactttattacaattttttgacaa 44641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 9853363 - 9853418
Alignment:
Q  45 ccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    |||||| |||||||  ||||||||||| ||||| |||||||||||||||| |||||    
T  9853363 ccctaggaatcgaacccggtattttccgggtacatccttggaaggagctccttgcc 9853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 667
Target Start/End: Original strand, 11068426 - 11068469
Alignment:
Q  624 agaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||||| |||| || ||||||||||    
T  11068426 agaaatgatatttgtacaaccactttattacaattttttgacaa 11068469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 33418201 - 33418256
Alignment:
Q  45 ccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    |||||| |||||||| ||||||| ||| |||||||| ||||||||||||| |||||    
T  33418201 ccctaggaatcgaatccggtattctccgggtacgtctttggaaggagctccttgcc 33418256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 49590034 - 49589995
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataacttttt 662  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  49590034 gagaaatgatatttgtacaaccactttattacaacttttt 49589995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 745 - 804
Target Start/End: Original strand, 16515 - 16574
Alignment:
Q  745 agagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  16515 agagaaaataaaagttgtcaacaaagttgtcataaatggttgtcaatatatcactactct 16574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 622 - 667
Target Start/End: Original strand, 16386 - 16431
Alignment:
Q  622 ggagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  16386 ggagaaatgatatttgtacaaccactttattataattttttgacaa 16431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 745 - 804
Target Start/End: Complemental strand, 23633272 - 23633213
Alignment:
Q  745 agagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  23633272 agagaaaataaaagttgtcaacaaaattgtcagaaatggttgtcaatatatcaccactct 23633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 23633394 - 23633350
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  23633394 gagaaatgatatttctacaaccactttattataactttttgacaa 23633350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 741 - 804
Target Start/End: Original strand, 7693435 - 7693498
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||||||| |||||| |||| |||||  ||||||||||  |||||||||||||||    
T  7693435 gaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatcactactct 7693498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 3821378 - 3821422
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  3821378 gagaaatgatatttgtacaaccactttattacaattttttgacaa 3821422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 19789147 - 19789103
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || |||| |||||||||||||    
T  19789147 gagaaatgatatttgtacaaccattttattacaactttttgacaa 19789103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 667
Target Start/End: Original strand, 16199267 - 16199302
Alignment:
Q  632 tatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16199267 tatttgtacaaccactttattataactttttgacaa 16199302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 19789027 - 19788964
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||| | |||||||| |||| |||||  ||||||||||  |||||||||||||||    
T  19789027 gaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 19788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 10312802 - 10312716
Alignment:
Q  11 tgtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctcttt 97  Q
    |||||| ||||| ||| || |||||  || |||||||| | |||||||  |||||||| ||||||  ||||||||||||||||||||    
T  10312802 tgtagaggcatgcacattgcccaaacgttattctccctgggaatcgaacccggtatttcccaggtttgtccttggaaggagctcttt 10312716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 2333365 - 2333406
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttga 664  Q
    ||||||||||| |||||||||||||| |||| ||||||||||    
T  2333365 gagaaatgataattgtacaaccactttattacaactttttga 2333406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 1688379 - 1688316
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  1688379 gaagagagaaaataaaagttgtgaataaaattgtcacaaatggttgtcaatatatcactactct 1688316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 13073584 - 13073509
Alignment:
Q  25 cactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||||||||| ||| ||| || | | ||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  13073584 cactggccaaacattgttccccatgggaatcgaactcggtattctccaggtacgtccttggaaggagctcattgcc 13073509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 41162935 - 41163016
Alignment:
Q  13 tagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctc 94  Q
    |||||||||||||||||||||| | || ||| | || | ||||||| ||||||||| || | ||||||||||||||||||||    
T  41162935 tagaagcatgtacactggccaagtgttgttccctctggaaatcgaactcggtatttcccggatacgtccttggaaggagctc 41163016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 10096813 - 10096769
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  10096813 gagaaatgatatttgtacaaccactttattacaactttttgacaa 10096769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 42516650 - 42516694
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  42516650 gagaaatgatatttgtacaaccactttattacaactttttgacaa 42516694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 51397942 - 51397898
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  51397942 gagaaatgatatttgtacaaccactttattacaactttttgacaa 51397898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 2559332 - 2559278
Alignment:
Q  46 cctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| |||||||| |||||||  ||||||||||||||||||||||||| |||||    
T  2559332 cctagaaatcgaatccggtattccccaggtacgtccttggaaggagctcgttgcc 2559278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 799
Target Start/End: Original strand, 42516754 - 42516812
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcact 799  Q
    ||||||| ||||| |||||||||| ||||||||||| ||||||||||  ||||||||||    
T  42516754 gaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatcact 42516812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 3574498 - 3574586
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||| |||||  |||||||||| | || |||||||| | ||| ||| ||||||||  | ||||||||||||||||||||||| |||||    
T  3574498 gtagaggcatgcgcactggccaagtgttgttctccctgggaattgaactcggtattccctaggtacgtccttggaaggagctccttgcc 3574586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 17363230 - 17363274
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||    
T  17363230 gagaaatgatatttgtacaatcactttattacaactttttgacaa 17363274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 25140026 - 25139982
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  25140026 gagaaatgatatttgtacaaccactttattacaattttttgacaa 25139982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 31147231 - 31147275
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  31147231 gagaaatgatatttgtacaaccactttattacaattttttgacaa 31147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 51318703 - 51318747
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||||||  | |||||||||||||||    
T  51318703 gagaaatgatatttgtacaaccactttgtgataactttttgacaa 51318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 55005398 - 55005446
Alignment:
Q  52 aatcgaattcggtattttccaggtacgtccttggaaggagctctttgcc 100  Q
    ||||||||||||||||| |||| |||||| ||||||||||||| |||||    
T  55005398 aatcgaattcggtatttcccagatacgtctttggaaggagctcattgcc 55005446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 8906415 - 8906352
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||| ||| |||||| ||||||||||| | ||||||||  |||||||| ||||||    
T  8906415 gaagagagaaaatgaaaattgtcatcaaaattgtcacatatggttgtacatatatcattactct 8906352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 667
Target Start/End: Complemental strand, 34114185 - 34114144
Alignment:
Q  626 aaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  34114185 aaatgatatttgtacaactattttattataactttttgacaa 34114144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 35332706 - 35332747
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttga 664  Q
    |||||||||||||||||||||||||| || |||| |||||||    
T  35332706 gagaaatgatatttgtacaaccactttatgataattttttga 35332747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 667
Target Start/End: Complemental strand, 46794573 - 46794528
Alignment:
Q  622 ggagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||||  | | |||||||||||||    
T  46794573 ggagaaatgatatttgtacaaccactttctgacaactttttgacaa 46794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 36819 - 36757
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  36819 gaagagagaaaataaaagttgtcaacaaagttgtcaaaaatgattgtcaatatatcaatactc 36757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 36937 - 36893
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||    
T  36937 gagaaatgatatttgcacaaccactttattacaactttttgacaa 36893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 17500697 - 17500741
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  17500697 gagaaatgatatttgtacaaccactttattataactttttgacaa 17500741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 17552517 - 17552473
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  17552517 gagaaatgatatttgtacaaccactttattataactttttgacaa 17552473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 16567316 - 16567360
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || ||||||||||||||||||    
T  16567316 gagaaatgatatttgtacaaccattttattataactttttgacaa 16567360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 16598346 - 16598302
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || ||||||||||||||||||    
T  16598346 gagaaatgatatttgtacaaccattttattataactttttgacaa 16598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 49089115 - 49089053
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactc 803  Q
    ||||||||||||| |||||||||| |||| |||||| |||| |||||  ||||||||||||||    
T  49089115 gaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcactactc 49089053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 47644708 - 47644749
Alignment:
Q  626 aaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  47644708 aaatgatatttgtacaaccactttattataattttttgacaa 47644749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 742 - 802
Target Start/End: Original strand, 5724159 - 5724219
Alignment:
Q  742 aagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactact 802  Q
    ||||||||||||||||||||||| | || |||||  ||||||||||  |||||||||||||    
T  5724159 aagagagaaaataaaagttgtcatccaatttgtcttaaatggttgtacatatatcactact 5724219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 804
Target Start/End: Original strand, 17500817 - 17500880
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||| |||||| ||| |||| |||||  ||||||||||  |||||||||||||||    
T  17500817 gaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17500880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 17552397 - 17552334
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||| |||||| ||| |||| |||||  ||||||||||  |||||||||||||||    
T  17552397 gaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17552334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 18785726 - 18785645
Alignment:
Q  12 gtagaagcatgtacactggccaaatatttttctccctagtaatcgaattcggtattttccaggtacgtccttggaaggagct 93  Q
    ||||| |||||  |||||||||| | || ||| |||||| |||||||  |||||||  || |||||||||||||||||||||    
T  18785726 gtagaggcatgcgcactggccaagtgttgttccccctaggaatcgaacccggtattccccgggtacgtccttggaaggagct 18785645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 10806 - 10762
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  10806 gagaaatgatatttgtacaaccactttattacaattttttgacaa 10762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 802
Target Start/End: Complemental strand, 10668 - 10637
Alignment:
Q  771 ttgtcaaaaatggttgtcaatatatcactact 802  Q
    ||||||||||||||||||||||||||||||||    
T  10668 ttgtcaaaaatggttgtcaatatatcactact 10637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 4315 - 4359
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || || |||||||||||||||    
T  4315 gagaaatgatatttgtacaaccattttatgataactttttgacaa 4359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 800
Target Start/End: Original strand, 4435 - 4493
Alignment:
Q  742 aagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcacta 800  Q
    |||||||||||||| |||||||| |||| ||||||  |||||||||  |||||||||||    
T  4435 aagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcacta 4493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 60469 - 60513
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || |||| |||||||||||||    
T  60469 gagaaatgatatttgtacaaccattttattacaactttttgacaa 60513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 155906 - 155950
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    ||||||||||||||||||||||| || |||| |||||||||||||    
T  155906 gagaaatgatatttgtacaaccattttattacaactttttgacaa 155950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 804
Target Start/End: Original strand, 156026 - 156089
Alignment:
Q  741 gaagagagaaaataaaagttgtcaacaaaattgtcaaaaatggttgtcaatatatcactactct 804  Q
    ||||||||||||| | |||||||| |||| |||||  ||||||||||  |||||||||||||||    
T  156026 gaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 156089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 199266 - 199310
Alignment:
Q  623 gagaaatgatatttgtacaaccacttcattataactttttgacaa 667  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  199266 gagaaatgatatttgtacaaccactttattacaattttttgacaa 199310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University